Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016- 01-13] 959 sequences; 30,717,923 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq598 154 2e-32 >seq598 Length=260485 Score = 154 bits (170), Expect = 2e-32 Identities = 741/1157 (64%), Gaps = 32/1157 (3%) Strand=Plus/Minus Query 71697 GGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCA---TATTGTATAAT 71753 ||| | |||||| || || || || || ||||||| || |||| || | ||||| Sbjct 23351 GGCTAGAGATGCTAGGTTGCACACAGCGACCTCATCAGG---GGCACAGTACTCGATAAT 23295 Query 71754 TTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 71813 |||||||| || || || ||||| |||| ||||| ||||| ||||| ||| Sbjct 23294 CTCAGTGCACAGGTTCGAACTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTT 23235 Query 71814 ACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 71873 || || || || || ||||| || | ||||| ||| |||||| || | ||| || Sbjct 23234 GCAGTGGTCTTTGTAGAGCATAAAAGGGTTGCCAGTCTCAGTCTGAGCCTCCAGAATGGC 23175 Query 71874 TTTCCAGACGACTC-GAGCCTTTATTATATTCTTGT-ATCTCTTTTCTCTTTC--GTATT 71929 | ||| | | || | ||||| | | | || | | | ||| ||| ||| | Sbjct 23174 ATACCACA-GTTTCTGGGCCTTGACAAC---CATGCGACCGCGACCCTCCTTCTCGTACT 23119 Query 71930 GTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCG 71989 | ||| | || ||||| || || | || | || || || |||||||| | Sbjct 23118 TTTCATACAGAGCCTCAAACTCTTCGCCATAGCAATCCGCCAAGCCGGGGCATTCATTGG 23059 Query 71990 GACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCC 72049 | ||||| | | ||| || ||| | | || || ||||| || | || |||| Sbjct 23058 GGCACATGAGAGTCCAGTCCTCATTCTTCTCAACACGCTTCATGAACAAGTCGCAGATCC 22999 Query 72050 AAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTT-TAAGA 72108 | || || | ||||| || | | | || || ||||| ||||| |||| Sbjct 22998 ACAGGGCCAAGAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAAG- 22940 Query 72109 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGC 72168 ||||||||| | | | ||||| |||||| || || | || ||||| | |||| || Sbjct 22939 TCGAGGAACTCGAAGACATCAGCATGCCATGGCTCGAGATAAATGGCAAAGGCTCCAGGT 22880 Query 72169 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 72228 || |||||||| ||||| || | || | |||||||| || |||| | | ||| ||| Sbjct 22879 CGCTTGTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGTAGCATGGGA 22820 Query 72229 ATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA--T 72286 | || || || || | ||| || || || | || || ||| ||||||||||| Sbjct 22819 ACGATGCCGTTCGAAGTACCGTTAGTGCCAGCAATGTAAGAGCCAGTGGCACGAATACGG 22760 Query 72287 TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 72346 || |||| ||||| || || || ||||| || || || | || || || | | Sbjct 22759 TGAACATTG--AGACCGATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGG 22702 Query 72347 TATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTT 72406 |||| || |||||||| || || |||||| |||||| | ||| ||||| ||||| | Sbjct 22701 TATCGTAAATGCCCTCGATGCTGTCATCCTTCATGTCGACTAGGAAACATGAAGACAACT 22642 Query 72407 GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 72466 | | ||| || |||||||| | ||||| || ||||| || || | || || Sbjct 22641 GAGCCTGGGGAGTACCGGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAG 22582 Query 72467 ACAGTAGATTGTACGTCTCAA-TAGCTGAT--TCTATATCCCATTGATGTATTCCTACCG 72523 ||| || ||||| || |||| | ||| || | || | | || || || | Sbjct 22581 ACATAAGGTTGTAGGTTTCAAGCACACGATCGACTTTGTCACCCCAA---ATACCCACAG 22525 Query 72524 CGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGT 72583 | |||||||||| ||| ||||| || | ||||| ||||| || | ||| | | || Sbjct 22524 CAACACGCATTATCATGTGCTGGGGACGCTCAACAATCTTACCATCAAGTTTGAGTAGGT 22465 Query 72584 AGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAA 72643 | || || | || ||||| ||||| || | ||| ||||| || ||||| | || Sbjct 22464 ACGAACGCTCGAGCGTCTTAAAGCCAAAGTACTGGTAGTTGAAGTCACGGTCGTACACAA 22405 Query 72644 TAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTT--GAAAT 72701 | | || | || | |||||| | ||| | | ||| || ||| || || Sbjct 22404 TGGCAGAGTCCAGCTCATCCTTGTGACGCATAA-TGCACTCAT-ATGTCTCTTTGGAGAT 22347 Query 72702 AATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTC 72761 || || || ||| | || || |||||||||| | | | || || ||| Sbjct 22346 CATAGGGGAGGCTTTACGGTTCGCGGGGTTAACATAGTGGTAAAGGTCAGACACCAC-CG 22288 Query 72762 ACTA-AATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 || | || | || || |||| |||||| ||||| || || || || | |||||| || | Sbjct 22287 ACGACCATTGCTTCTTGGTTTGCTTGTGAAGATTAGAGACAGCAATACGGGCGGCCAGGA 22228 Query 72821 TGGCATAATCTGGATGT 72837 |||||||||| |||||| Sbjct 22227 TGGCATAATCGGGATGT 22211 Score = 86.0 bits (94), Expect = 8e-12 Identities = 343/537 (64%), Gaps = 5/537 (1%) Strand=Plus/Minus Query 70789 TCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATG 70848 |||| ||| | || || || || || | | || || | |||||| | ||||||||| Sbjct 24268 TCCTGGTCTACAGTGAATTGGATAGGTGCAGCAGCAGCCTGCGTACGCAAGTAGTACATG 24209 Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTA 70908 || || || ||||| || |||| || ||| ||||| || || | ||| | | Sbjct 24208 CCCGTCTTGAGACCTAGTTTCCAGCCAGCAAAGTGCATGCTGGTGATCTTGCCCATGGTG 24149 Query 70909 GGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 70968 ||||| |||||||| || | ||||| ||| || ||||| || || | || ||| Sbjct 24148 GGATCTTTCATGTGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACCACGATCAGCA 24089 Query 70969 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 71028 ||||||| | | || || | ||| ||||||| || || || | |||||| Sbjct 24088 GCCATTTGCACAACTGTACGCTGGGAAATCTCCCAAACGGTCTTGTACAGAGCTTTAATA 24029 Query 71029 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTG 71085 || | |||| | | | | ||||||||||| ||| || |||||||| | ||| || Sbjct 24028 TCAGCAGGAATGCTAGAGATGTTCTGAATGGAGCCATTGTCCGCAATAATGCGATTCTTC 23969 Query 71086 ATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACT 71145 || | ||| |||||| ||| || | | ||||| || || || || Sbjct 23968 ATATTGTCAGACCATAAACCAAGATCGACTAGGTCACGTAGGAGCCAGGGGTTGACGACC 23909 Query 71146 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGAC 71205 || || || |||| | || | || |||||| || || || ||||| | || Sbjct 23908 TGGAACTCGCCAGCAAGAACGCGGCGCTGGTAAATGTTGGATGTGTAGGGTTCGAAGCAC 23849 Query 71206 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTA 71265 ||||| || |||| ||| || | || || || ||||| ||||| || | ||| | Sbjct 23848 TCATTGTTGCCCAGAATCTGCGACGTGCTGGCTGTAGGCATGGGTGCAACTAGAAGAGAA 23789 Query 71266 TTTCTAAGACCATG-TGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATC 71321 || | | |||||| || | || || || |||||||| ||| | ||| || || Sbjct 23788 TTGCGTACACCATGCTGCT-TAATCTTCTCCTTTAGAGAAGTCCAGTCCCACAGGTC 23733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671131154718840