Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016- 01-13] 959 sequences; 30,717,923 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq209 237 2e-57 seq281 134 2e-26 >seq209 Length=70751 Score = 237 bits (262), Expect = 2e-57 Identities = 576/863 (67%), Gaps = 31/863 (4%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||||| |||||||||| ||||| | || ||| | |||||| Sbjct 41972 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACTGCTGAGGAGATTGATCTG 41913 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || ||||| || |||| ||| | | ||| ||| || |||| | || || || Sbjct 41912 TCTAAGGATCTCCACGACTGGAACAACCGTCTGAACAAAGACGAGCAGTACTTCATCTCC 41853 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 |||||| | ||||||||||| | ||| ||||| ||||||||||| ||||| ||||| || Sbjct 41852 CACATTCTTGCCTTCTTTGCTGCCTCTGATGGCATCGTCAACGAAAATCTCGTTGA-GCG 41794 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGAT 125257 ||||| ||| || || || |||| ||||| || || ||||| |||||||| Sbjct 41793 CTTCTCAGGCGAGGTGCAGATCCCCGAGGCCCGCTGCTTCTATGGTTTCCAGATCATGAT 41734 Query 125258 TGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC---C 125314 || ||| | ||||| |||| ||||| |||||||||| ||||| || | | Sbjct 41733 GGAAAACATCCACTCTGAAACCTACTCGCTGCTGATTGACACCTACATCAAGGAGCCCTC 41674 Query 125315 GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGC 125374 |||||| | | || || || || || || ||||| | || | || || ||||| Sbjct 41673 GCAACGCACATAC---CTGTTCAATGCCATTGACACTATTCCCTGCATCCGCCGCAAGGC 41617 Query 125375 TCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGC 125434 | |||| | ||||||| ||| | |||| ||| ||| | | || || || Sbjct 41616 CGACTGGGCTCTGAAGTGGATCACCGACAAGGAGTCGACGTTTGCCCAGCGCCTAGTTGC 41557 Query 125435 ATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAA 125494 || || || || ||||||||||| || || || || || ||||||| ||||| Sbjct 41556 CTTTGCTGCTGTCGAGGGCATCTTTTTCTCAGGCGCCTTCGCCTCCATCTTCTGGCTGCG 41497 Query 125495 GAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGG 125554 ||||| || |||||||| || ||||| | |||||| |||| ||||| || ||||| Sbjct 41496 CAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCAAACGAGCTTATTTCTCGTGATGAGGG 41437 Query 125555 CCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT-ATCTGCGTCCCGAGTGCAGA 125612 ||| ||| |||||||| || ||||| ||||| || | | | ||| || || Sbjct 41436 CCTGCACACCGACTTTGCTTGCCTGCTGTTCTCGCATCTGAACAACCGCCCCAGCAAGGA 41377 Query 125613 TCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTT 125672 | | | ||||| ||||| || |||||||| ||| || | ||||| Sbjct 41376 CCTTGTG--CAAAAGATCATC---------ACTGATGCCGTCGTGATCGAGAAGGAGTTC 41328 Query 125673 CTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTAC 125732 || ||||| | || || | | || | || |||||| | || ||| ||||| Sbjct 41327 CTGACCGAGGCTCTGCCCTGCGGTCTGCTAGGAATGAACGCTGATCTGATGAAGCAGTAC 41268 Query 125733 ATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG--ATTGGC--CG-CAAGATTTACA 125787 || |||||||| || || || || || |||| | ||| || ||| | ||| Sbjct 41267 ATTGAGTTTGTTGCTGACCGCCTGCT-----TGTTGCTCTAGGCAACGAGAAGGTGTACC 41213 Query 125788 ACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTT 125847 |||| || ||||| || |||||| | ||| || || | || ||||| ||||| | Sbjct 41212 GTGCCACAAACCCCTTCGACTTCATGGAGAACATCTCGCTCGGCGGCAAGACTAACTTCT 41153 Query 125848 TCGAGAAGAAGGTCAGCGAGTAC 125870 |||||||| ||| |||| ||| Sbjct 41152 TCGAGAAGCGTGTCGGCGACTAC 41130 >seq281 Length=219731 Score = 134 bits (148), Expect = 2e-26 Identities = 173/233 (74%), Gaps = 7/233 (3%) Strand=Plus/Minus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 |||||||| ||||| || ||||| || |||||| | || | || || ||||||| || Sbjct 25450 GGCGATCTAGGGCCTGTATACGGCTTTCAGTGGCGCCATTTCGGAGCCGAGTATGTGGAT 25391 Query 70127 TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTG-CAGACAATCATTGACACTCT 70185 | ||||||||||| ||||||| ||||||||||| || | || | |||| ||| || Sbjct 25390 GCCAAGACAGACTATACGGGTCAAGGTGTTGATCAGCTGGCTGA-AGTCATCCACAAACT 25332 Query 70186 CAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCA 70245 ||||||||| || ||| || | ||| | ||| | | ||||| ||||| |||||| | Sbjct 25331 CAAGACCAACCCGTACGATCGGCGTATCATTATGACCGCTTGGAACCCTGCGGATTTGAA 25272 Query 70246 CCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTA---CTCGTAC 70294 | ||||| || |||||||| ||| ||||| || ||||| || ||||||| Sbjct 25271 GAAGATGGCGCTGCCACCGTGCCACATGTTT-GCGCAGTTCTATGTCTCGTAC 25220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741050316552840