Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016- 01-13] 959 sequences; 30,717,923 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq753 111 4e-19 seq249 104 5e-17 >seq753 Length=27693 Score = 111 bits (122), Expect = 4e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 |||||||| || |||||||| || || | || || || || || || ||||| || || Sbjct 10743 TTCTGAATGTTGTAGTCAGACAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 10802 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491 || | ||| || || || || || || || || ||||||||||| | || ||||| || Sbjct 10803 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 10862 Query 104492 ACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550 | || || | ||| || ||||| || ||||| |||||||| ||||| || || || || Sbjct 10863 ATAGTGTC-CGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAA 10921 Query 104551 TATCTGCATTTTG 104563 |||||||| ||| Sbjct 10922 AATCTGCATCTTG 10934 >seq249 Length=99862 Score = 104 bits (114), Expect = 5e-17 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||||||||||||||| || ||||| || || || | || || || || || ||||| Sbjct 88387 GTAGATTCTTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTTCCG 88446 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || ||||| || || || || ||||| ||||| | || Sbjct 88447 GCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTG 88506 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| ||| | || || || || ||||| ||||| || ||||| || Sbjct 88507 ACGTTGTCAATGGTGTCGGAGGACTCGACTTCGAGGGTAATGGTCTTTCCGGTAAGGGTC 88566 Query 104543 TTTACAA 104549 || |||| Sbjct 88567 TTGACAA 88573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151384252551972