Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016- 01-13] 959 sequences; 30,717,923 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq598 156 5e-33 seq209 147 3e-30 >seq598 Length=260485 Score = 156 bits (172), Expect = 5e-33 Identities = 596/918 (65%), Gaps = 32/918 (3%) Strand=Plus/Minus Query 63163 CCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTC 63219 |||| || || ||||||| || ||||| | | ||| || |||| |||| || | Sbjct 23079 CCAAGCCGGGGCATTCATTGGGGCACATGAGAGTCCAGTCC---TCATTCTTCTCAACAC 23023 Query 63220 GTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCT 63279 | ||||| || | || ||||| || || | ||||| || | | | ||| | Sbjct 23022 GCTTCATGAACAAGTCGCAGATCCACAGGGCCAAGAATAGGTCACGAGCACGGACTTCTT 22963 Query 63280 CGTTTCCTGTATTCTTTT-TAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCC 63338 | ||||| ||||| |||| ||||||||| | | | ||||| |||||| || || Sbjct 22962 CCTTTCCGTGGTTCTTGCGTAAG-TCGAGGAACTCGAAGACATCAGCATGCCATGGCTCG 22904 Query 63339 AAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTG 63398 | || ||||| | ||||||| || |||||||| ||||| || | || | |||||| Sbjct 22903 AGATAAATGGCAAAGGCTCCAGGTCGCTTGTTTCCACCCTGGTCAACATAACGGGCGGTG 22844 Query 63399 TTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATA 63458 || || |||| | | ||| |||| || ||||| || |||| || || || | || Sbjct 22843 TTGTTGAAAACACGTAGCATGGGAACGATGCCGTTCGAAGTACCGTTAGTGCCAGCAATG 22784 Query 63459 TAGCTTCCACTGGCACGAATA--TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAG 63516 || ||| ||||||||||| | |||| ||||| || || || ||||| || | Sbjct 22783 TAAGAGCCAGTGGCACGAATACGGTGAACATTG--AGACCGATACCACCAGCCATCTTGG 22726 Query 63517 AGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGT 63576 | || | || || || | || || || || ||||| ||||| ||||| |||||| Sbjct 22725 AAATCATGGCACAAGTCTTGAGGGTATCGTAAATGCCCTCGATGCTGTCATCCTTCATGT 22666 Query 63577 TAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAG 63636 | ||| ||||| ||||| || | ||| || |||||||| | ||||| | Sbjct 22665 CGACTAGGAAACATGAAGACAACTGAGCCTGGGGAGTACCGGCATTAAAGAGCGTAGGTG 22606 Query 63637 AAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAA-TAGCTGA--GTCTA 63693 | ||||| || || | || ||| | || ||||| || |||| | || | || Sbjct 22605 ATGCGTGAGTGAAGAACTTGCTAGACATAAGGTTGTAGGTTTCAAGCACACGATCGACTT 22546 Query 63694 T---ATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAA 63750 | | |||| ||| || || || |||||||||| ||||||||| || | |||| Sbjct 22545 TGTCACCCCA------AATACCCACAGCAACACGCATTATCATGTGCTGGGGACGCTCAA 22492 Query 63751 CGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 63810 | ||||| | | ||| | | ||| || || | || ||||| ||||| || | Sbjct 22491 CAATCTTACCATCAAGTTTGAGTAGGTACGAACGCTCGAGCGTCTTAAAGCCAAAGTACT 22432 Query 63811 TGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAA 63870 ||| ||||| || ||||| | ||| | |||| || | |||||| | ||| Sbjct 22431 GGTAGTTGAAGTCACGGTCGTACACAATGGCAGAGTCCAGCTCATCCTTGTGACGCATAA 22372 Query 63871 CTATATCCATGGTGATACTT--GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAAC 63928 | | ||| || ||| || || || || || ||| | || || ||||| Sbjct 22371 -TGCACTCAT-ATGTCTCTTTGGAGATCATAGGGGAGGCTTTACGGTTCGCGGGGTTAAC 22314 Query 63929 ATAGTTGAATAAATCCTCCATCACTTCACTA-AATAGtttttttGTTTCCTTGTGTAGAT 63987 ||||| | | | || || ||| || | || | || || |||| |||||| |||| Sbjct 22313 ATAGTGGTAAAGGTCAGACACCAC-CGACGACCATTGCTTCTTGGTTTGCTTGTGAAGAT 22255 Query 63988 TTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGT-G 64046 | || || || || | |||||| || ||||||||||| ||||| |||| | || || | Sbjct 22254 TAGAGACAGCAATACGGGCGGCCAGGATGGCATAATCGGGATG-TGTGACGGTCATGTAG 22196 Query 64047 GCTGCTATTTCGGCTGCC 64064 || || ||||||| ||| Sbjct 22195 GCGGCAGTTTCGGCGGCC 22178 Score = 84.2 bits (92), Expect = 3e-11 Identities = 209/317 (66%), Gaps = 3/317 (1%) Strand=Plus/Minus Query 61983 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 62042 |||| ||| | |||||||| || || || | || | | |||||| | |||||||| Sbjct 24268 TCCTGGTCTACAGTGAATTGGATAGGTGCAGCAGCAGCCTGCGTACGCAAGTAGTACATG 24209 Query 62043 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTC 62102 ||||| || ||||| || |||| || ||| ||||| || || | ||| | Sbjct 24208 CCCGTCTTGAGACCTAGTTTCCAGCCAGCAAAGTGCATGCTGGTGATCTTGCCCATGGTG 24149 Query 62103 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 62162 |||||| || || || || | ||| || ||| || ||||| || || | || ||| Sbjct 24148 GGATCTTTCATGTGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACCACGATCAGCA 24089 Query 62163 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 62222 ||||||| | | || || | ||| ||||||| || || || | |||||| Sbjct 24088 GCCATTTGCACAACTGTACGCTGGGAAATCTCCCAAACGGTCTTGTACAGAGCTTTAATA 24029 Query 62223 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 62279 || | |||| | | | | ||||||||||| ||| || || ||||| | |||||| Sbjct 24028 TCAGCAGGAATGCTAGAGATGTTCTGAATGGAGCCATTGTCCGCAATAATGCGATTCTTC 23969 Query 62280 ATCTCATCATTCCATAA 62296 || | ||| |||||| Sbjct 23968 ATATTGTCAGACCATAA 23952 >seq209 Length=70751 Score = 147 bits (162), Expect = 3e-30 Identities = 379/572 (66%), Gaps = 18/572 (3%) Strand=Plus/Plus Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 |||| || || || || ||| |||||| ||||| || | | ||| || ||||| || Sbjct 41407 AACAGCAGGCAAGCAAAGTCGGTGTGCAGGCCCTCATCACGAGAAATAAGCTCGTTTGAG 41466 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 || || || || ||||| || |||||||| ||||| || ||||| ||||| | || Sbjct 41467 AAGGTCAGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCGCCT 41526 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC--CGGCGC 33472 || || ||||| || || || ||||||||||||| || | || || ||| || | | Sbjct 41527 GAGAAAAAGATGCCCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCA-AACGTCGACTC 41585 Query 33473 --TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33530 |||| |||||||| ||||||| |||||||| | || || || || || Sbjct 41586 CTTGTCGGTGATCCACTTCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTC 41645 Query 33531 TATGGCATTAAAGAGATAGtttttttCATTACTA----TCTTTAACATAAGTATCGATCA 33586 |||||||| || || || | | | || | | || || | || || || |||| Sbjct 41646 AATGGCATTGAACAGGTA----TGTGCGTTGCGAGGGCTCCTTGATGTAGGTGTCAATCA 41701 Query 33587 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATC 33646 || || |||| || || |||||||| || ||||| || || ||||| || | Sbjct 41702 GCAGCGAGTAGGTTTCAGAGTGGATGTTTTCCATCATGATCTGGAAACCATAGAAGCAGC 41761 Query 33647 TAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTC 33706 ||||||| ||||| || || | || || || | | |||||| || || || | Sbjct 41762 GGGCCTCGGGGATCTGCACCTCGCCTGAGAAGCGCTCAACGAGATTTTCGTTGACGATGC 41821 Query 33707 CGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT- 33765 | ||| ||| ||||| || || | | || || || || | |||||| |||| Sbjct 41822 CATCAGAGGCAGCAAAGAAGGCAAGAATGTGGGAGATGAAGTACTGCTCGTCT-TTGTTC 41880 Query 33766 ---AGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAAT 33822 | || ||||| || | || ||| ||||| | ||| | || || | ||||| || Sbjct 41881 AGACGGTTGTTCCAGTCGTGGAGATCCTTAGACAGATCAATCTCCTCAGCAGTCCAGAAG 41940 Query 33823 GATGCCTCTGCCTTTTTATACATGTTCCAGAT 33854 || ||||| ||||| || ||||| | |||||| Sbjct 41941 GAGGCCTCGGCCTTCTTGTACATCTGCCAGAT 41972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622939732420440