Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016- 01-13] 959 sequences; 30,717,923 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq598 152 7e-32 >seq598 Length=260485 Score = 152 bits (168), Expect = 7e-32 Identities = 509/778 (65%), Gaps = 23/778 (3%) Strand=Plus/Minus Query 63153 TAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTC 63212 |||| ||||||||| | | | ||||| |||||| || || | || ||||| | ||| Sbjct 22943 TAAG-TCGAGGAACTCGAAGACATCAGCATGCCATGGCTCGAGATAAATGGCAAAGGCTC 22885 Query 63213 CAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACA 63272 |||| || |||||||| ||||| || | || | |||||||| || |||| | | || Sbjct 22884 CAGGTCGCTTGTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGTAGCA 22825 Query 63273 TTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAA 63332 | |||| || || || || ||||| || || || | || || ||| ||||||||| Sbjct 22824 TGGGAACGATGCCGTTCGAAGTACCGTTAGTGCCAGCAATGTAAGAGCCAGTGGCACGAA 22765 Query 63333 TA--TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 63390 || | |||| ||||| || || || ||||| || || || | || || || Sbjct 22764 TACGGTGAACATTG--AGACCGATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTT 22707 Query 63391 TAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGA 63450 | ||||| || |||||||| || || |||||| |||||| | ||| ||||| ||| Sbjct 22706 GAGGGTATCGTAAATGCCCTCGATGCTGTCATCCTTCATGTCGACTAGGAAACATGAAGA 22647 Query 63451 CATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTT 63510 || || | ||| || |||||||| | ||||| || |||||||| || | || Sbjct 22646 CAACTGAGCCTGGGGAGTACCGGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTT 22587 Query 63511 TTCAGAAAGTAGATTGTACGTCTCAA-TAGCTGA--GTCTAT---ATCCCATTGATGAAT 63564 ||| | || ||||| || |||| | || | || | | |||| ||| Sbjct 22586 GCTAGACATAAGGTTGTAGGTTTCAAGCACACGATCGACTTTGTCACCCCA------AAT 22533 Query 63565 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 63624 || || || |||||||||| ||||||||| || | ||||| ||||| | | ||| Sbjct 22532 ACCCACAGCAACACGCATTATCATGTGCTGGGGACGCTCAACAATCTTACCATCAAGTTT 22473 Query 63625 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63684 | | ||| || || | || ||||| ||||| || | ||| ||||| || || Sbjct 22472 GAGTAGGTACGAACGCTCGAGCGTCTTAAAGCCAAAGTACTGGTAGTTGAAGTCACGGTC 22413 Query 63685 GTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCAT-GGTAATAC 63743 ||| | ||| | |||| || | |||||| | ||| | || ||| || Sbjct 22412 GTACACAATGGCAGAGTCCAGCTCATCCTTGTGACGCATAA-TGCACTCATATGTCTCTT 22354 Query 63744 TTGAAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCA 63803 | || || ||||| | ||| | || || || ||||||| | | | || || Sbjct 22353 TGGAGATCATAGGGGAGGCTTTACGGTTCGCGGGGTTAACATAGTGGTAAAGGTCAGACA 22294 Query 63804 TCACTTCACTA-AATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCG 63862 ||| || | || | || || |||| ||||| ||||| || || || || | ||| Sbjct 22293 CCAC-CGACGACCATTGCTTCTTGGTTTGCTTGTGAAGATTAGAGACAGCAATACGGGCG 22235 Query 63863 GCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGCTGCC 63919 || || ||||||||||| ||||| |||| | || || ||| || ||||||| ||| Sbjct 22234 GCCAGGATGGCATAATCGGGATG-TGTGACGGTCATGTAGGCGGCAGTTTCGGCGGCC 22178 Score = 87.8 bits (96), Expect = 2e-12 Identities = 210/317 (66%), Gaps = 3/317 (1%) Strand=Plus/Minus Query 61838 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 61897 |||| ||| | |||||||| || || || | || | | |||||| | |||||||| Sbjct 24268 TCCTGGTCTACAGTGAATTGGATAGGTGCAGCAGCAGCCTGCGTACGCAAGTAGTACATG 24209 Query 61898 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTC 61957 ||||| || ||||| || |||| || ||| ||||| || || | ||| | Sbjct 24208 CCCGTCTTGAGACCTAGTTTCCAGCCAGCAAAGTGCATGCTGGTGATCTTGCCCATGGTG 24149 Query 61958 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 62017 |||||| || || || || | ||| || ||| || ||||| || || | || ||| Sbjct 24148 GGATCTTTCATGTGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACCACGATCAGCA 24089 Query 62018 GCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 62077 ||||||| | || || || | ||| ||||||| || || || | |||||| Sbjct 24088 GCCATTTGCACAACTGTACGCTGGGAAATCTCCCAAACGGTCTTGTACAGAGCTTTAATA 24029 Query 62078 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 62134 || | |||| | | | | ||||||||||| ||| || || ||||| | |||||| Sbjct 24028 TCAGCAGGAATGCTAGAGATGTTCTGAATGGAGCCATTGTCCGCAATAATGCGATTCTTC 23969 Query 62135 ATCTCATCATTCCATAA 62151 || | ||| |||||| Sbjct 23968 ATATTGTCAGACCATAA 23952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633624404336400