Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016- 01-13] 959 sequences; 30,717,923 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq209 165 9e-36 >seq209 Length=70751 Score = 165 bits (182), Expect = 9e-36 Identities = 477/726 (66%), Gaps = 11/726 (2%) Strand=Plus/Plus Query 92927 TCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTACA 92986 ||||| ||||| || |||||||| ||||| |||| ||||||||||| |||| Sbjct 41251 TCAGCAACAAACTCAATGTACTGCTTCATCAGATCAGCGTTCATTCCTAGCAGACCGCAG 41310 Query 92987 GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTATT 93046 || ||||| ||||||| ||| || |||||||| || ||||| || | | ||| || || Sbjct 41311 GGCAGAGCCTCGGTCAGGAACTCCTTCTCGATCACGACGGCATCAGTGATGAT--CTTTT 41368 Query 93047 ACTCTAC-TATTTGGTGGTTT--TTGTACGACATAATTGTACATTAAGCACGCAAAGTCG 93103 | | | | ||| ||| |||| | | || | ||| | ||| ||||||||| Sbjct 41369 GCACAAGGTCCTTGCTGGGGCGGTTGTTC-AGATGCGAGAACAGCAGGCAAGCAAAGTCG 41427 Query 93104 GTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGT 93163 || || | || || || || || || | ||| || ||| || | ||| || | || Sbjct 41428 GTGTGCAGGCCCTCATCACGAGAAATAAGCTCGTTTGAGAAGGTCAGACCAGGCATGAGA 41487 Query 93164 CCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACG 93223 || || || ||||| || || || || || || || ||||| || || || || Sbjct 41488 CCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCGCCTGAGAAAAAGATGCCCTCGACA 41547 Query 93224 GCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAA 93283 || ||||| || || | || | |||||| | | || | ||||||| || | | Sbjct 41548 GCAGCAAAGGCAACTAGGCGCTGGGCAAACGTCGACTCCTTGTCGGTGATCCACTTCAGA 41607 Query 93284 GCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCT 93343 ||||| ||||| || || || || | || || || || || || ||||| Sbjct 41608 GCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTCAATGGCATTGAACAGGTATGTG 41667 Query 93344 CGCT-CGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGAC 93402 || | || | || | ||||| || || || | ||| || || ||||||| |||| Sbjct 41668 CGTTGCGAGGGCTCCTTG-ATGTAGGTGTCAATCAGCAGCGAGTAGGTTTCAGAGTGGAT 41726 Query 93403 ATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 || ||||| || ||||| || ||||| || | || || | ||||||||| || Sbjct 41727 GTTTTCCATCATGATCTGGAAACCATAGAAGCAGCGGGCCTCGGGGATCTGCACCTCGCC 41786 Query 93463 AGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAA 93522 || || | ||| ||||||||||| ||||| || ||||| || || ||||| || || | Sbjct 41787 TGAGAAGCGCTCAACGAGATTTTCGTTGACGATGCCATCAGAGGCAGCAAAGAAGGCAAG 41846 Query 93523 TATATGCTTTATAAAATGTTTCTCATCATCTTT---AAGCTTATCCCAATCGGATAGATC 93579 || || || || | | ||| || | || | | || | ||| ||| ||||| Sbjct 41847 AATGTGGGAGATGAAGTACTGCTCGTCTTTGTTCAGACGGTTGTTCCAGTCGTGGAGATC 41906 Query 93580 TTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATC 93639 || || ||||| | || || ||||||| || || || || || || |||||||| | Sbjct 41907 CTTAGACAGATCAATCTCCTCAGCAGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTG 41966 Query 93640 CCATAT 93645 ||| || Sbjct 41967 CCAGAT 41972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556854124631160