Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016-
01-13] 959 sequences; 30,717,923 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq209 125 1e-23
seq598 96.9 7e-15
seq382 96.9 7e-15
>seq209
Length=70751
Score = 125 bits (138), Expect = 1e-23
Identities = 523/820 (64%), Gaps = 13/820 (2%)
Strand=Plus/Plus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|||||||| |||| |||||| | || ||||| |||||||||||||||||||||||||
Sbjct 41149 TCGAAGAAGTTAGTCTTGCCGCCGAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTTGTG 41208
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682
||| |||| ||| | ||| || || || | | |||||| || |||||||| |
Sbjct 41209 GCACGGTACACCTTCTCGTTGCCTAGAGCAACAAGCAGGCGGTCAGCAACAAACTCAATG 41268
Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742
||||| |||||| |||| |||||| || | || || || || | ||||| | |
Sbjct 41269 TACTGCTTCATCAGATCAGCGTTCATTCCTAGCAGACCGCAGGGCAGAGCCTCGGTCAGG 41328
Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTG----TGCCAGAGA 251798
|| ||||| ||| | | || || || | || | ||| | | | | |
Sbjct 41329 AACTCCTTCTCGATCACGACGGCATCAGTGATGATCTTTTGCACAAGGTCCTTGCTGGGG 41388
Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858
| | ||||| ||| | ||| |||| || |||| | |||||| ||||| ||
Sbjct 41389 C-GGTTGTT---CAGATGCGAGAACAGCAGGCAAGCAAAGTCGGTGTGCAGGCCCTCATC 41444
Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918
||| || | |||||| || | ||| |||||||| | ||||| || | |||||
Sbjct 41445 ACGAGAAATAAGCTCGTTTGAGAAGGTCAGACCAGGCATGAGACCACGCTTGCGCAGCCA 41504
Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAG 251978
|||||| | | |||| || ||||| | | ||||||||| | | ||||| ||
Sbjct 41505 GAAGATGGAGGCGAAGGCGCCTGAGAAAAAGATGCCCTCGACAGCAGCAAAGGCAACTAG 41564
Query 251979 GCGCTCAGCAAA---CGACTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTTCTT 252035
||||| ||||| ||||| | | | | ||||| | ||||| | |||||
Sbjct 41565 GCGCTGGGCAAACGTCGACTCCTTGTCGGTGATCCACTTCAGAGCCCAGTCGGCCTTGCG 41624
Query 252036 TCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTC 252095
| | ||| || || || || |||| || || | | || | | ||||
Sbjct 41625 GCGGATGCAGGGAATAGTGTCAATGGCATTGAACAGGTATGTGCGTTGCGAGGGCTCCTT 41684
Query 252096 GATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTG 252155
|||| | |||| ||| || ||||| | || || |||||| ||| | | |||||
Sbjct 41685 GATGTAGGTGTCAATCAGCAGCGAGTAGGTTTCAGAGTGGATGTTTTCCATCATGATCTG 41744
Query 252156 GTAAGCATAGAATAGACGCGCGGAAGGG-TCGGTGACTTCCGTGGAAAAGTTGTTTGCAA 252214
| || ||||||| || || ||| || | || || || ||| | | |
Sbjct 41745 GAAACCATAGAAGCAGCGGGCCTCGGGGATCTG-CACCTCGCCTGAGAAGCGCTCAACGA 41803
Query 252215 TGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAAGT 252274
|| || | || |||||||| | | ||||||||| |||||||| ||||||||
Sbjct 41804 GATTTTCGTTGACGATGCCATCAGAGGCAGCAAAGAAGGCAAGAATGTGGGAGATGAAGT 41863
Query 252275 GACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGGAACTT 252334
|||| || | ||| || || ||||||| | |||| | |||| || |
Sbjct 41864 ACTGCTCGTCTTTGTTCAGACGGTTGTTCCAGTCGTGGAGATCCTTAGACAGATCAATCT 41923
Query 252335 CTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT 252374
| || | |||||||| | || | | ||||||||||||||
Sbjct 41924 CCTCAGCAGTCCAGAAGGAGGCCTCGGCCTTCTTGTACAT 41963
>seq598
Length=260485
Score = 96.9 bits (106), Expect = 7e-15
Identities = 182/268 (68%), Gaps = 0/268 (0%)
Strand=Plus/Minus
Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGA 293174
||||| || || | || ||||||||||||||||| | | | ||||| | ||
Sbjct 24122 CTGCGATTGGTCAATGAAAGCACCACGATCAGCAGCCATTTGCACAACTGTACGCTGGGA 24063
Query 293175 GATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTG 293234
|||||||| |||||||||| || || | ||||| | |||||| | | |||||
Sbjct 24062 AATCTCCCAAACGGTCTTGTACAGAGCTTTAATATCAGCAGGAATGCTAGAGATGTTCTG 24003
Query 293235 GATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCAAGTCCCACGAGC 293294
|| || || || |||||||| | |||||||| | || ||||| ||| || |
Sbjct 24002 AATGGAGCCATTGTCCGCAATAATGCGATTCTTCATATTGTCAGACCATAAACCAAGATC 23943
Query 293295 AATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGACG 293354
| || || || | || | | |||||| || ||||||| ||||| ||| ||| ||
Sbjct 23942 GACTAGGTCACGTAGGAGCCAGGGGTTGACGACCTGGAACTCGCCAGCAAGAACGCGGCG 23883
Query 293355 GCTGTAAATGTTCGAAGTGATGGGTTCG 293382
||||||||| || ||| |||||||
Sbjct 23882 CTGGTAAATGTTGGATGTGTAGGGTTCG 23855
>seq382
Length=283822
Score = 96.9 bits (106), Expect = 7e-15
Identities = 156/222 (70%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
|||||||||||||| |||| |||||| || || || |||| ||||| ||||| |||
Sbjct 86929 GGTGAGGATCTGTGCAACTGCACTTTCTCCCTTGCCTACGGTGCCAAGATCCTGCTTAAC 86870
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
|| | ||| | |||||||| | || || ||||| |||||||||||| |
Sbjct 86869 CAGACTCACCTGCGTCTGAAGCGTGGTCAGCGCTACGGTCTGTGCGGTCCCAATGGTTCC 86810
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524
|| ||| || || ||||| ||||| |||| ||| | || || || || || |||
Sbjct 86809 GGAAAGTCTACCCTGATGCGTGCCATCAACAACGAACAGGTCGAGGGCTTCCCCAA-GCA 86751
Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565
|| ||||| | ||| || | || ||||||||| | |||||
Sbjct 86750 GTCCGAGGTCAAGACTGTCTTCGTCGAGCACGACCTGGACTC 86709
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027824170776519
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |