Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016- 01-13] 959 sequences; 30,717,923 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq209 125 1e-23 seq598 96.9 7e-15 seq382 96.9 7e-15 >seq209 Length=70751 Score = 125 bits (138), Expect = 1e-23 Identities = 523/820 (64%), Gaps = 13/820 (2%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| |||| |||||| | || ||||| ||||||||||||||||||||||||| Sbjct 41149 TCGAAGAAGTTAGTCTTGCCGCCGAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTTGTG 41208 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 ||| |||| ||| | ||| || || || | | |||||| || |||||||| | Sbjct 41209 GCACGGTACACCTTCTCGTTGCCTAGAGCAACAAGCAGGCGGTCAGCAACAAACTCAATG 41268 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| |||||| |||| |||||| || | || || || || | ||||| | | Sbjct 41269 TACTGCTTCATCAGATCAGCGTTCATTCCTAGCAGACCGCAGGGCAGAGCCTCGGTCAGG 41328 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTG----TGCCAGAGA 251798 || ||||| ||| | | || || || | || | ||| | | | | | Sbjct 41329 AACTCCTTCTCGATCACGACGGCATCAGTGATGATCTTTTGCACAAGGTCCTTGCTGGGG 41388 Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 | | ||||| ||| | ||| |||| || |||| | |||||| ||||| || Sbjct 41389 C-GGTTGTT---CAGATGCGAGAACAGCAGGCAAGCAAAGTCGGTGTGCAGGCCCTCATC 41444 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 ||| || | |||||| || | ||| |||||||| | ||||| || | ||||| Sbjct 41445 ACGAGAAATAAGCTCGTTTGAGAAGGTCAGACCAGGCATGAGACCACGCTTGCGCAGCCA 41504 Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAG 251978 |||||| | | |||| || ||||| | | ||||||||| | | ||||| || Sbjct 41505 GAAGATGGAGGCGAAGGCGCCTGAGAAAAAGATGCCCTCGACAGCAGCAAAGGCAACTAG 41564 Query 251979 GCGCTCAGCAAA---CGACTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTTCTT 252035 ||||| ||||| ||||| | | | | ||||| | ||||| | ||||| Sbjct 41565 GCGCTGGGCAAACGTCGACTCCTTGTCGGTGATCCACTTCAGAGCCCAGTCGGCCTTGCG 41624 Query 252036 TCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTC 252095 | | ||| || || || || |||| || || | | || | | |||| Sbjct 41625 GCGGATGCAGGGAATAGTGTCAATGGCATTGAACAGGTATGTGCGTTGCGAGGGCTCCTT 41684 Query 252096 GATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTG 252155 |||| | |||| ||| || ||||| | || || |||||| ||| | | ||||| Sbjct 41685 GATGTAGGTGTCAATCAGCAGCGAGTAGGTTTCAGAGTGGATGTTTTCCATCATGATCTG 41744 Query 252156 GTAAGCATAGAATAGACGCGCGGAAGGG-TCGGTGACTTCCGTGGAAAAGTTGTTTGCAA 252214 | || ||||||| || || ||| || | || || || ||| | | | Sbjct 41745 GAAACCATAGAAGCAGCGGGCCTCGGGGATCTG-CACCTCGCCTGAGAAGCGCTCAACGA 41803 Query 252215 TGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAAGT 252274 || || | || |||||||| | | ||||||||| |||||||| |||||||| Sbjct 41804 GATTTTCGTTGACGATGCCATCAGAGGCAGCAAAGAAGGCAAGAATGTGGGAGATGAAGT 41863 Query 252275 GACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGGAACTT 252334 |||| || | ||| || || ||||||| | |||| | |||| || | Sbjct 41864 ACTGCTCGTCTTTGTTCAGACGGTTGTTCCAGTCGTGGAGATCCTTAGACAGATCAATCT 41923 Query 252335 CTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT 252374 | || | |||||||| | || | | |||||||||||||| Sbjct 41924 CCTCAGCAGTCCAGAAGGAGGCCTCGGCCTTCTTGTACAT 41963 >seq598 Length=260485 Score = 96.9 bits (106), Expect = 7e-15 Identities = 182/268 (68%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGA 293174 ||||| || || | || ||||||||||||||||| | | | ||||| | || Sbjct 24122 CTGCGATTGGTCAATGAAAGCACCACGATCAGCAGCCATTTGCACAACTGTACGCTGGGA 24063 Query 293175 GATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTG 293234 |||||||| |||||||||| || || | ||||| | |||||| | | ||||| Sbjct 24062 AATCTCCCAAACGGTCTTGTACAGAGCTTTAATATCAGCAGGAATGCTAGAGATGTTCTG 24003 Query 293235 GATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCAAGTCCCACGAGC 293294 || || || || |||||||| | |||||||| | || ||||| ||| || | Sbjct 24002 AATGGAGCCATTGTCCGCAATAATGCGATTCTTCATATTGTCAGACCATAAACCAAGATC 23943 Query 293295 AATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGACG 293354 | || || || | || | | |||||| || ||||||| ||||| ||| ||| || Sbjct 23942 GACTAGGTCACGTAGGAGCCAGGGGTTGACGACCTGGAACTCGCCAGCAAGAACGCGGCG 23883 Query 293355 GCTGTAAATGTTCGAAGTGATGGGTTCG 293382 ||||||||| || ||| ||||||| Sbjct 23882 CTGGTAAATGTTGGATGTGTAGGGTTCG 23855 >seq382 Length=283822 Score = 96.9 bits (106), Expect = 7e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||||||||| |||| |||||| || || || |||| ||||| ||||| ||| Sbjct 86929 GGTGAGGATCTGTGCAACTGCACTTTCTCCCTTGCCTACGGTGCCAAGATCCTGCTTAAC 86870 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | ||| | |||||||| | || || ||||| |||||||||||| | Sbjct 86869 CAGACTCACCTGCGTCTGAAGCGTGGTCAGCGCTACGGTCTGTGCGGTCCCAATGGTTCC 86810 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| || || ||||| ||||| |||| ||| | || || || || || ||| Sbjct 86809 GGAAAGTCTACCCTGATGCGTGCCATCAACAACGAACAGGTCGAGGGCTTCCCCAA-GCA 86751 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 || ||||| | ||| || | || ||||||||| | ||||| Sbjct 86750 GTCCGAGGTCAAGACTGTCTTCGTCGAGCACGACCTGGACTC 86709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027824170776519