Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016- 01-13] 959 sequences; 30,717,923 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq249 163 5e-35 seq330 154 3e-32 seq382 150 3e-31 seq209 143 5e-29 seq753 132 9e-26 >seq249 Length=99862 Score = 163 bits (180), Expect = 5e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||||||| || || || ||||| || ||||| || ||||| Sbjct 88357 CCACCACGCAGACGCAGGACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCGGAA 88416 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| ||||| | || ||||| || ||| Sbjct 88417 AGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGA 88476 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| || |||||||| | || || ||| Sbjct 88477 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAGGACTCGACT 88536 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGAC 68449 || | ||| ||||| ||||| || ||||||||||| Sbjct 88537 TCGAGGGTAATGGTCTTTCCGGTAAGGGTCTTGAC 88571 Score = 156 bits (172), Expect = 8e-33 Identities = 176/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 68226 TTTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTA 68285 ||||| | || || || || |||| |||||||| || || ||||| || |||||||| Sbjct 88120 TTTTACTGGCCACCACGCAGACGCAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTG 88179 Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 || |||||||| || | ||||| || | |||||| || ||||| ||||| | || ||| Sbjct 88180 TAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGG 88239 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || || || || || ||||| || || ||||| | |||||| || ||||| || | Sbjct 88240 TCCGGAGGGATACCCTCCTTATCCTGGATCTTGGACTTGACATTGTCAATGGTATCAGAG 88299 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || ||||| | ||| ||||| || ||||| | |||||||||||| || ||||| Sbjct 88300 GACTCGACTTCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 88355 >seq330 Length=314808 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| || | ||| || |||||||| || |||||||| || ||||| Sbjct 237243 CCACCACGCAGGCGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 237184 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || || | | || ||||| || ||| Sbjct 237183 AGAGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGA 237124 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| ||||| ||||| | || || || Sbjct 237123 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACC 237064 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||| ||| ||||| || ||||| |||||||||||||| Sbjct 237063 TCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 237026 >seq382 Length=283822 Score = 150 bits (166), Expect = 3e-31 Identities = 671/1045 (64%), Gaps = 56/1045 (5%) Strand=Plus/Plus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 ||||| |||||||||| | || ||| |||||| ||||| ||||| ||| ||||| Sbjct 85920 CGCCATTGGATGTACTCGGAAGGAGTCTTGTCCAAGTGGTGGTCAATGTGGGCAAAAGCG 85979 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| | ||| || || || ||||| |||| | | || ||| || Sbjct 85980 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCAACAGTGGGA 86039 Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160 ||| || || ||||| ||||| || || | ||| || ||||||||||| || || Sbjct 86040 ACAAGCTCACCAGTCAGGACATTGATCAGAGTCGACTTACCGGCACCATTGGGACCGATG 86099 Query 225161 ACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTGCTGAAGATCTCAGGGCCA 225220 ||| |||| ||||| |||| | ||| | | | || | ||| |||| |||| Sbjct 86100 ACGGCAATACGGGACGACAGAGAGCACTGGAAAGTGATGTCG--GAA-ATCTG-GGGC-- 86153 Query 225221 GTTTGGTAAGCAAAGGCCACGCCACG--CAGCTTCATG---------ATGGCACGGTCCT 225269 |||||| ||| || | | || ||| || ||||| | ||| Sbjct 86154 --TTGGTAGTACCAGGGTACTGGAAGGTCATCTTGGTGGCACGAAGAATGGCCTTGGCCT 86211 Query 225270 TGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCCT 225329 ||| | | |||||| ||||| |||||||||||||| ||| | || | | | | Sbjct 86212 TGGTCTTCACACCCTCAAGGAAACCGGGCTCGGGGAAGGTGAACTCGATCTCGGAGGCAC 86271 Query 225330 TCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCCGA 225389 || |||||||| || ||| ||| | ||| || || | | |||||| || Sbjct 86272 CAAGTTCGTAGTATGACTTGGCCGAGGGGCACTTCTTGACAAACTCGGCCAGGTTACCAC 86331 Query 225390 GGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGCGTCA 225448 ||| | | ||||||| | || |||| || ||||| ||| | ||| || |||| Sbjct 86332 GGTAACGCTTAAGCTTGAAGCGCT---CGTAGTGGACAATGTGCTG-GCAGACGTTGTCA 86387 Query 225449 AGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAG--GCCCTTGAGG 225505 ||||||||||||||||| || || || ||||| | || | | || || | ||| Sbjct 86388 AGGAAGCCAGAGTCGTGAGAGACGATAATGGAAGTGCAAG---GAGAGTTGCAC---AGG 86441 Query 225506 TGCGTGATG-AGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAG 225564 | || | ||||| ||||| | || |||| ||||| ||||| ||||| ||||| Sbjct 86442 TA-GTCCTCCAGCCACTTGACGTTCTTCACATCCAGATGGTTGGTAGGCTCGTCAAGAAG 86500 Query 225565 CAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCC 225624 |||||| |||| | | || | ||| || |||| ||||||||| ||||| || || Sbjct 86501 CAGGATATCAGGAGCCTCGAAAACGGCACGGCACAGAGCCAGCTTCATCTTCCAACCACC 86560 Query 225625 GGACAGGGAGCCGATTGAAACAG-AGTGCTTAGCTTCGTCAAAGCCGTACTCCAGGAGCG 225683 || || | | ||| | ||| | | || ||| || || |||| |||| ||| Sbjct 86561 AGAAAGAGCGGAGATCTCACCAGTAATCATTTGCTCGGTGAA-GCCGAACTCGTTCAGCT 86619 Query 225684 TCTGGATAATGCGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGAGGTAAT 225743 || ||| | | ||| | | | || | ||||||| ||||| | || | | Sbjct 86620 GCTTGATGACGTCCTCCTTGGTGGT---AGTG---ACGTTGGCGTCGGCC-AGCT-TCTT 86671 Query 225744 CATATAC-----------GGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTA 225792 |||| | |||||| || | | ||| | ||| | |||||| || ||| | Sbjct 86672 CATAGTCCATTCAATGGTGGTCATCTCAGTGTCAGCAGAGTCCAGGTCGTGCTCGACGAA 86731 Query 225793 CACCGTCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACG 225852 || ||| || || || | |||||||||||| | ||| | || || ||||| Sbjct 86732 GACAGTCTTGACCTCGGACTGCTTGGGGAAGCCCTCGACCTGTTCGTTGTTGATGGCACG 86791 Query 225853 GAGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTT 225912 | ||||||| ||| || | || ||||||||| || ||||| | | || ||||| Sbjct 86792 CATCAGGGTAGACTTTCCGGAACCATTGGGACCGCACAGACCGTAGCGCTGACCACGCTT 86851 Query 225913 GATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCA 225972 | ||| | || ||| || ||||||||| |||| |||||||||||||| ||| Sbjct 86852 CAGACGCAGGTGAGTCTGGTTAAGCAGGATCTTGGCACCGTAGGCAAGGGAGAAAGTGCA 86911 Query 225973 ATCGCACAGGTCCTCACCCTCCTCG 225997 | |||||| ||||||||||||||| Sbjct 86912 GTTGCACAGATCCTCACCCTCCTCG 86936 >seq209 Length=70751 Score = 143 bits (158), Expect = 5e-29 Identities = 310/459 (68%), Gaps = 10/459 (2%) Strand=Plus/Plus Query 9939 ACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGG 9998 || || ||||||||||| || || || |||||||||||| | |||||| |||| Sbjct 41116 ACACCAGCCTTCTGGTAGTCGCCGACACGCTTCTCGAAGAAGTTAGTCTTGCCGCCGAGC 41175 Query 9999 GAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACCGAGT 10058 || ||| |||||||||||| |||||||| ||| | || ||| || || || Sbjct 41176 GAGATGTTCTCCATGAAGTCGAAGGGGTTTGTGGCACGGTACACCTTCTCGTTGCCTAGA 41235 Query 10059 GCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTCATG 10118 || | | ||||||||| || ||||| |||||||| ||||||| || | |||||| Sbjct 41236 GCAACAAGCAGGCGGTCAGCAACAAACTCAATGTACTGCTTCATCAGATCAGCGTTCATT 41295 Query 10119 CCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGCTTCC 10178 || | || | |||||| | || ||| | ||| ||||| ||| | |||| || || Sbjct 41296 CCTAGCAGACCGCAGGGCAGAGCCTCGGTCAGGAACTCCTTCTCGATCACGACGGCATCA 41355 Query 10179 TCGACGATGCTCTTTACCACGTC----AAGGGACAGCTTGTTCTCGAGCTTCGAATACAG 10234 || ||| | | || | ||| ||| | | |||||| || | ||| |||| Sbjct 41356 GTGATGATCTTTTGCACAAGGTCCTTGCTGGGGC-GGTTGTTC---AGATGCGAGAACAG 41411 Query 10235 GAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACC 10294 || |||| | ||| |||||||| || || || | |||||| || || Sbjct 41412 CAGGCAAGCAAAGTCGGTGTGCAGGCCCTCATCACGAGAAATAAGCTCGTTTGAGAAGGT 41471 Query 10295 CAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGAA 10354 |||||| |||||||| || || |||||||||||||| |||| | ||| | || ||||| Sbjct 41472 CAGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCGCCTGAGAA 41531 Query 10355 CAGAAGACCCTCCAC-GCACACCCAGGCGACGAGGCGCT 10392 | | ||||| || ||| | |||| || ||||||| Sbjct 41532 AAAGATGCCCTCGACAGCA-GCAAAGGCAACTAGGCGCT 41569 >seq753 Length=27693 Score = 132 bits (146), Expect = 9e-26 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || || ||||| || || || || || | ||||| || | |||||| || ||||| || Sbjct 10743 TTCTGAATGTTGTAGTCAGACAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 10802 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 || | || ||||| || |||||||| |||||||| |||||||| | |||||| ||| Sbjct 10803 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 10862 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAAT 68453 || ||||| | || || || || | ||| || || || ||||| |||||||||||||| Sbjct 10863 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 10922 Query 68454 ATCTGCAT 68461 |||||||| Sbjct 10923 ATCTGCAT 10930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921611352051480