Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016- 01-13] 959 sequences; 30,717,923 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq209 325 7e-84 seq598 136 7e-27 >seq209 Length=70751 Score = 325 bits (360), Expect = 7e-84 Identities = 603/867 (70%), Gaps = 42/867 (5%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || |||| |||||| || ||||||||||| ||| Sbjct 41972 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACTGCTGAGGAGATTGATCTG 41913 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAA----CGAAAAGTTTTTCCTCAA 42415 | ||||| || |||| | || |||||| | ||| ||| ||| || Sbjct 41912 TCTAAGGATCTCCACGACTGGAACA-ACCGTCTGAACAAAGACGAGCAGTACTTCATCTC 41854 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 |||| || |||||||| || |||||||| ||||| ||||| || || || | | Sbjct 41853 CCACATTCTTGCCTTCTTTGCTGCCTCTGATGGCATCGTCAACGAAAATCTCGTTGAGCG 41794 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 ||| ||||||||| | ||||| ||||||||||| || |||||||| || Sbjct 41793 CTTCTCAGGCGAGGTGCAGATCCCCGAGGCCCGCTGCTTCTATGGTTTCCAGATCATGAT 41734 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGT 42595 || ||| | |||||||| ||| | ||| | |||| |||||| ||| ||| | Sbjct 41733 GGAAAACATCCACTCTGAAACCTACTCGCTGCTGATTGACACCTACATCAAGGAGCCC-T 41675 Query 42596 CG-AGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGG 42654 || | || | |||||||| ||||| || || || ||||||||| ||||| | Sbjct 41674 CGCAACGCACATACCTGTTCAATGCCATTGACACTATTCCCTGCATCCGCCGCAAGGCCG 41615 Query 42655 ACTGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAACGTTCGGCGAGAGGCTGGTAGCC 42713 ||||||| || || |||||| | | | | | | ||||| | | || | || || ||| Sbjct 41614 ACTGGGCTCTGAAGTGGATC-ACCGACAAGGAGTCGACGTTTGCCCAGCGCCTAGTTGCC 41556 Query 42714 TTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCT---C 42770 ||| | || |||||||||||||| ||||| |||||||||||||||||||||||||| | Sbjct 41555 TTTGCTGCTGTCGAGGGCATCTTTTTCTCAGGCGCCTTCGCCTCCATCTTCTGGCTGCGC 41496 Query 42771 AAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAG 42830 |||| ||| || ||||| || || |||||||| ||||| || || | || ||| Sbjct 41495 AAGC--GTGGTCTC-ATGCCTGGTCTGACCTTCTCAAACGAGCTTATTTCTCGTGATGAG 41439 Query 42831 GGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAA--GCCCT 42888 || ||||| | |||||||| ||||| ||||||||| || || | |||| |||| Sbjct 41438 GGCCTGCACACCGACTTTGCTTGCCTGCTGTTCTCG---CATCT---GAACAACCGCCCC 41385 Query 42889 CG-AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTC 42947 | ||||| | || | |||||||| || ||||| | |||||||||||||||||| Sbjct 41384 AGCAAGGACCTTGTGCAAAAGATCATCACTGATGCCGTCGTGATCGAGAAGGAGTTCCTG 41325 Query 42948 ACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATC 43007 || || | |||||| ||| | || |||||| || || ||| ||||||| Sbjct 41324 ACCGAGGCTCTGCCCTGCGGTCTGCTAGGAATGAACGCTGATCTGATGAAGCAGTACATT 41265 Query 43008 CAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACG--C 43065 ||| || || |||| || || || | | ||| || || | | || | | Sbjct 41264 GAGTTTGTTGCTGACCGCCTGCT-TG-----TTGCTCT-AG--GCAACGAGAAGGTGTAC 41214 Query 43066 CGTG-------CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTT 43118 |||| |||||||||||| ||||||||||||||| | | |||||||| ||||| Sbjct 41213 CGTGCCACAAACCCCTTCGACTTCATGGAGAACATCTCGCTCGGCGGCAAGACTAACTTC 41154 Query 43119 TTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||||||||||| |||| |||||||||| Sbjct 41153 TTCGAGAAGCGTGTCGGCGACTACCAG 41127 >seq598 Length=260485 Score = 136 bits (150), Expect = 7e-27 Identities = 828/1320 (63%), Gaps = 45/1320 (3%) Strand=Plus/Minus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || ||||| ||||| || | || |||||||||||||| | |||| || || Sbjct 23918 GTTGACGACCTGGAACTCGCCAGCAAGAACGCGGCGCTGGTAAATGTTGGATGTGTAGGG 23859 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 |||| || ||| |||||||||| ||||||| |||||| || || |||||||| | || Sbjct 23858 TTCGAAGCACTCATTGTTGCCCAGAATCTGCGACGTGCTGGCTGTAGGCATGGGTGCAAC 23799 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCA 244269 || ||| || | || || ||| || || | || |||||||||| Sbjct 23798 TAGAAGAGAATTGCGTACACCATGCTGCTTAATCTTCTCCTTTAGAGAAGTCCAGTCCCA 23739 Query 244270 CATGCC-CGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGC 244328 || | | | || ||| | | ||||||| |||||||||| | || | | Sbjct 23738 CAGGTCACTAGGAGTCA---CAT-------CCCACATATCAAACTGCAAGATGCCTTGGG 23689 Query 244329 TGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCT 244388 ||| || ||||| || || | ||| | ||| || |||||| | || || | Sbjct 23688 AGACAGGAGAACCCTCATAAGTTGAGTAAGTACCCTCCGTCTGGGCGAT-TTCCAT-TGA 23631 Query 244389 CGTCG--AGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTT 244446 | | || ||||||| ||||||||| || || ||| |||||| | | ||| || | Sbjct 23630 AGCAGTTAGTGCGGCGTGGTAGATGGTTTCAAAAATCTGCTTGTTGAGCTGGCGTGCTTC 23571 Query 244447 GCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGAT 244506 | | || || |||| | | ||| |||| ||||| ||||| || |||| Sbjct 23570 AGGGGATTCAAAAGGCATGCGGAGAGCAAGGAAAGCGTCAGCCAGGCCCTGTACACCGAC 23511 Query 244507 GCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCC 244566 || ||||| | ||| ||| ||||| | ||||| | || ||||| || | Sbjct 23510 ACCAATGGGACGGTGGCGCATGTTGCTGTTGTGAGCTTCCTGGACAGGGTAGTGATTCAC 23451 Query 244567 GTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAA 244626 ||||| | ||| |||||||| | | || ||| ||| ||| | ||| Sbjct 23450 ATCGATGATGCGGTTTAGGTTGCGAACAACAACTTGGGTGACTTCGTGTAGCTTTTTAAA 23391 Query 244627 GTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCT 244686 ||| ||||| | ||| | | || ||| || || ||||| | Sbjct 23390 GTCATACTC------ACCCTTG----TTGTAGTCC--ACGAAGGAAGGAAGGGCTAGAGA 23343 Query 244687 GGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAG 244746 || |||||||| || || ||||| || | | ||||| || |||||| ||||| || Sbjct 23342 TGCTAGGTTGCACACAGCGACCTCATCAGGGGCACAGTACTCGATAATCTCAGTGCACAG 23283 Query 244747 GTT---ACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTC 244803 ||| ||||| ||||| || || | | |||||| |||| ||||||| ||| Sbjct 23282 GTTCGAACTGCGA---ATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTGCAGTGGTC 23226 Query 244804 CTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAG 244863 ||||||||||| || || || ||||| ||| || | || | | | ||| || Sbjct 23225 TTTGTAGAGCATAAAAGGGTTGCCAGTCTCAGTCTGAGCCTCCAGAATGGCATACCACAG 23166 Query 244864 GTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGC 244923 | | |||||||| | ||||| | ||||| |||||| ||||| || Sbjct 23165 TTTCTGGGCCTTGACAACCATGCGACCGCGACCCTCCTTCTCGTACTTTTCATACAGAGC 23106 Query 244924 CTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACT 244983 ||| ||||| ||| || || | | ||||||||| |||||||||||| | Sbjct 23105 CTCAAACTCTTCGCCATAGCAATCCGCCAAGCCGGGGCATTCATTGGGGCACATGAGAGT 23046 Query 244984 CCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAA 245043 ||| || | | || || | || |||||| | |||| |||||| |||||| ||| Sbjct 23045 CCAGTCCTCATTCTTCTCAACACGCTTCATGAACAAGTCGCAGATCCACAGGGCCAAGAA 22986 Query 245044 GAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAA 245103 ||||| | | | || ||| || |||||| | | || | || || || Sbjct 22985 TAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAAGTCGAGGAACTCGAA 22926 Query 245104 GACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCC 245163 ||| || | ||||| ||||| | || | || | ||| || || |||||||| || || Sbjct 22925 GACATCAGCATGCCATGGCTCGAGATAAATGGCAAAGGCTCCAGGTCGCTTGTTTCCACC 22866 Query 245164 CTGGTCCACCATCCTCTCGAGCG----CGTTGAAGATGCGCAGGGTAGGCACTATGCCGT 245219 ||||| || | | || ||| |||||| | || || | || || ||||||| Sbjct 22865 CTGGT----CAACATAACGGGCGGTGTTGTTGAAAACACGTAGCATGGGAACGATGCCGT 22810 Query 245220 TAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCC--TGAGGTTGCTGATGGA 245277 | || ||||| ||||| ||||| | ||| || | | | | || || || Sbjct 22809 TCGAAGTACCGTTAGTGCCAGCAATGTAAGAGCCAGTGGCACGAATACGGTGAACATTGA 22750 Query 245278 CATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTAT 245337 | || | || || || |||||| || | ||| || |||||| ||| || || Sbjct 22749 GA--CCGATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAAAT 22692 Query 245338 GCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGG 245397 |||||| |||||||| |||||||| || || || || || |||| ||| | || ||| Sbjct 22691 GCCCTCGATGCTGTCATCCTTCATGTCGACTAGGAAACATGAAGACAACTGAGCCTGGGG 22632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944327879733840