Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016- 01-13] 959 sequences; 30,717,923 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq249 114 3e-20 seq209 96.9 8e-15 seq753 84.2 5e-11 >seq249 Length=99862 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| ||| ||||| || || || | || ||||| |||||| Sbjct 88165 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAG 88224 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| || ||||| || || ||||||||||| || | || || || Sbjct 88225 ATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTATCCTGGATCTTGGACTTGACATTG 88284 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || || |||||||| || || ||||| || |||| ||||||||| Sbjct 88285 TCAATGGTATCAGAGGACTCGACTTCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGACG 88344 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 88345 AAGATTTGCAT 88355 >seq209 Length=70751 Score = 96.9 bits (106), Expect = 8e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 269112 CGAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCT 269171 ||| || |||||| | || ||| | || || | || | || ||||| || ||||| Sbjct 41340 CGAGAAGGAGTTCCTGACCGAGGCTCTGCCCTGCGGTCTGCTAGGAATGAACGCTGATCT 41281 Query 269172 CATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAA 269231 ||||| || || || || || || ||||| || | | || || || | ||||| Sbjct 41280 GATGAAGCAGTACATTGAGTTTGTTGCTGACCGCCTGCTTGTTGCTCTAGGCAACGAGAA 41221 Query 269232 AGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGAC 269291 |||||| | | | || ||||||| ||| ||||| || ||||||| || ||||| Sbjct 41220 GGTGTACCGTGCCACAAACCCCTTCGACTTCATGGAGAACATCTCGCTCGGCGGCAAGAC 41161 Query 269292 GAACTTCTTCGAAAAGCGTGTCAGCGACTATCA 269324 ||||||||||| ||||||||| ||||||| || Sbjct 41160 TAACTTCTTCGAGAAGCGTGTCGGCGACTACCA 41128 >seq753 Length=27693 Score = 84.2 bits (92), Expect = 5e-11 Identities = 134/191 (70%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || || || || ||||| | || || || || || || | || || || ||||||||| Sbjct 10743 TTCTGAATGTTGTAGTCAGACAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 10802 Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || ||||| || || ||| || || || || ||||| || || | || || || Sbjct 10803 AGGCGCTGCTG---GTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTG 10859 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| || || || || ||||| || |||||||| || || || ||||||||| Sbjct 10860 TCGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACG 10919 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 10920 AAAATCTGCAT 10930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179639905365202