Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016- 01-13] 959 sequences; 30,717,923 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq209 116 8e-21 seq382 93.3 9e-14 >seq209 Length=70751 Score = 116 bits (128), Expect = 8e-21 Identities = 175/249 (70%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 243502 ATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGG 243561 |||||||| || || || | | ||| ||||| ||| | ||| ||| | || ||| | Sbjct 41363 ATCATCACTGATGCCGTCGTGATCGAGAAGGAGTTCCTGACCGAGGCTCTGCCCTGCGGT 41304 Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 || | || |||||| |||| || ||| |||||||| || || || || |||||| | Sbjct 41303 CTGCTAGGAATGAACGCTGATCTGATGAAGCAGTACATTGAGTTTGTTGCTGACCGCCTG 41244 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 | | || || || | ||||| |||||| ||| |||||||| | ||| |||||| Sbjct 41243 CTTGTTGCTCTAGGCAACGAGAAGGTGTACCGTGCCACAAACCCCTTCGACTTCATGGAG 41184 Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGC 243741 ||| ||||| || || |||||||||||||| ||||||||| | || || || Sbjct 41183 AACATCTCGCTCGGCGGCAAGACTAACTTCTTCGAGAAGCGTGTCGGCGACTACCAGAAG 41124 Query 243742 CCTGGTGTG 243750 |||||||| Sbjct 41123 GCTGGTGTG 41115 >seq382 Length=283822 Score = 93.3 bits (102), Expect = 9e-14 Identities = 245/362 (68%), Gaps = 24/362 (7%) Strand=Plus/Plus Query 333641 ACCCTCGAGGAACCCGGGCTCGGGGAACTTCCACGTGGTCTTCGTCTCGGTAAGGGCGTA 333700 |||||| ||||| |||||||||||||| | || | ||| | | ||| |||| Sbjct 86222 ACCCTCAAGGAAACCGGGCTCGGGGAAGGTGAACTCGATCTCGGAGGCACCAAGTTCGTA 86281 Query 333701 GTA--ACTCG-CTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTT 333757 ||| ||| | | || ||| | |||||| || ||||||| ||| || || ||| Sbjct 86282 GTATGACTTGGCCGA---GGGGCACTTCTTGACAAACTCGGCCAGGTTACCACGGTAACG 86338 Query 333758 CTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTG-CAAACAGCGTCGAGGAACC 333816 ||| ||||| | | | ||||| |||| ||| | | || || || ||| ||||| | Sbjct 86339 CTTAAGCTTGAAGC---GCTCGTAGTGGACAAT-GTGCTGGCAGACGTTGTCAAGGAAGC 86394 Query 333817 CGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGG----TTGATCAGGTATTCA 333872 | |||||||| || || || | | ||| || | |||| ||| |||||| || Sbjct 86395 CAGAGTCGTGAGAGACGATAATG---GAA--GTGC--AAGGAGAGTTGCACAGGTAGTCC 86447 Query 333873 ATCAGCCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGTAGTAGC 333932 ||||||| | ||||| |||| ||||||||||| |||||||||||||| || | Sbjct 86448 TCCAGCCACTTGACGTTCTTCACATCCAGATGGTTGGTAGGCTCGTCAAGAAGCAGGATA 86507 Query 333933 TTTGCGTTCAGGAGCATTGCACGTGCA-AGAGCGAGTTTCATTTTCCACCCTCCTGAAAG 333991 | | | || | ||||| ||| ||||| || ||||| ||||| || || ||||| Sbjct 86508 TCAGGAGCCTCGAAAACGGCACG-GCACAGAGCCAGCTTCATCTTCCAACCACCAGAAAG 86566 Query 333992 AG 333993 || Sbjct 86567 AG 86568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102866448706650