Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016-
01-13] 959 sequences; 30,717,923 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq753 96.9 4e-15
seq249 93.3 5e-14
seq330 91.5 2e-13
>seq753
Length=27693
Score = 96.9 bits (106), Expect = 4e-15
Identities = 141/197 (72%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078
|||| ||||| ||||| |||| ||| || || | || || |||||||| |||||||| |
Sbjct 10741 CCTTCTGAATGTTGTAGTCAGACAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 10800
Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTC 42137
| || ||||||||||| | || | || |||||||||| ||| | || | |||| |
Sbjct 10801 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC-TGAATCTTGGACTTGACATTG 10859
Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197
| | ||||| || || || |||| || || || || ||||| || ||||| ||
Sbjct 10860 TCGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACG 10919
Query 42198 AAGATTTGCATTTTCAC 42214
|| || ||||| || ||
Sbjct 10920 AAAATCTGCATCTTGAC 10936
>seq249
Length=99862
Score = 93.3 bits (102), Expect = 5e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||||| ||||| || | || |||||| || || ||||| || | || || || |
Sbjct 88140 ACGCAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCC 88199
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
|| || |||||||| |||||||| ||||| ||||||||||| | || | | ||||||
Sbjct 88200 ATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTT 88259
Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172
||| ||| || |||| | | | || || || || || |||| || ||
Sbjct 88260 ATCCTGGATCTTGGACTTGACATTGTCAATGGTATCAGAGGACTCGACTTCGAGGGTAAT 88319
Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||| |||||||| | ||||| || |||||||||||
Sbjct 88320 GGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 88355
Score = 87.8 bits (96), Expect = 2e-12
Identities = 130/182 (71%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077
|| || ||||| ||||| || | || || || | || || |||||||| || |||||
Sbjct 88393 TCTTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAG 88452
Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137
||||| ||||||||||| | || | || |||||||||| ||| || |||| |||
Sbjct 88453 ATGAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTT 88511
Query 42138 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | | |||||| || || || |||| || ||||| || || || || ||||| ||
Sbjct 88512 GTCAATGGTGTCGGAGGACTCGACTTCGAGGGTAATGGTCTTTCCGGTAAGGGTCTTGAC 88571
Query 42197 AA 42198
||
Sbjct 88572 AA 88573
Score = 86.0 bits (94), Expect = 7e-12
Identities = 122/169 (72%), Gaps = 2/169 (1%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| ||||| ||||| || | ||| || || | || || |||||||| ||||||||
Sbjct 88676 CTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAA 88735
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
||||| ||||||||||| | || | | |||||||||| || | || | | | |||
Sbjct 88736 GATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCC-TGGATCTTAGACTTAACGT 88794
Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 42184
| | | || || || ||||| |||| |||||||| ||||| ||
Sbjct 88795 TGTCAATAGTATCCGAGGACTCCACCTCGAGGGTGATGGTCTTGCCAGT 88843
>seq330
Length=314808
Score = 91.5 bits (100), Expect = 2e-13
Identities = 132/184 (72%), Gaps = 2/184 (1%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| || | |||||| || | || || |||||||||||||| ||
Sbjct 237208 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCAAGCTGCTTACCAGCAAA 237149
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
|| | ||||||||||| | || | || |||||||||| ||| || |||| |||
Sbjct 237148 GATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 237090
Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195
| | | |||||| || || || || | || ||||| || ||||| || ||||| |
Sbjct 237089 TGTCGATCGTGTCCGAAGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGA 237030
Query 42196 CAAA 42199
| ||
Sbjct 237029 CGAA 237026
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543206288236560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |