Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016- 01-13] 959 sequences; 30,717,923 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq598 147 2e-30 >seq598 Length=260485 Score = 147 bits (162), Expect = 2e-30 Identities = 484/740 (65%), Gaps = 18/740 (2%) Strand=Plus/Plus Query 93898 CCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT-GAC 93956 || || || || || || || || || | | ||| ||||||| |||||||| | ||| Sbjct 22608 CCTACGCTCTTTAATGCCGGTACTCCCCAGGCTCAGTTGTCTTCATGTTTCCTAGTCGAC 22667 Query 93957 GAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTC 94016 | |||| ||| |||| || |||| ||| | ||||||| ||||| | || || Sbjct 22668 -ATGAAGGATGACAGCATCGAGGGCATTTACGATACCCTCAAGACTTGTGCCATGATTTC 22726 Query 94017 AAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTA--CGTGCCAGGGGTTCCTAC 94074 || || || || ||||| ||| ||| ||| |||| ||||||| || || ||| Sbjct 22727 CAAGATGGCTGGTGGTATCGGTCTCAATGTTCAC--CGTATTCGTGCCACTGGCTCTTAC 22784 Query 94075 ATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAAC 94134 || || || || || || || |||||| |||| || ||||| || || ||||||||| Sbjct 22785 ATTGCTGGCACTAACGGTACTTCGAACGGCATCGTTCCCATGCTACGTGTTTTCAACAAC 22844 Query 94135 GCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTC 94194 | || || || || ||||||||||| | | | || | || || | |||||| Sbjct 22845 ACCGCCCGTTATGTTGACCAGGGTGGAAACAAGCGACCTGGAGCCTTTGCCATTTATCTC 22904 Query 94195 GAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGAT 94254 ||||| ||||| || || || | ||| ||||| | || ||||||||||| || || Sbjct 22905 GAGCCATGGCATGCTGATGTCTTCGAGTTCCTCGACTTACGCAAGAACCACGGAAAGGAA 22964 Query 94255 CTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGC 94314 | | || | ||||| |||| || || ||| | ||| | || ||||| || Sbjct 22965 GAAGTCCGTGCTCGTGACCTATTCTTGGCCCTGTGGATCTGCGACTTGTTCATGAAGCGT 23024 Query 94315 GTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGAC 94374 || ||||| || | ||||| ||| | || ||||||||||| ||||| || | || Sbjct 23025 GTTGAGAAGAATGAGGACTGGACTCTCATGTGCCCCAATGAATGCCCCGGCTTGGCGGA- 23083 Query 94375 GTTTGTGGATCGCG----TTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGG-CAAGG 94429 ||| || ||| ||||| | |||||| ||||| | |||| | || Sbjct 23084 --TTG-CTATGGCGAAGAGTTTGAGGCTCTGTATGAAAAGTACGAGAAGGAGGGTCGCGG 23140 Query 94430 CCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGA 94489 | | | |||| | | || ||| |||||| || || |||| | ||| |||| Sbjct 23141 TC-GCATGGTTGTCAAGGCCCAGAAACTGTGGTATGCCATTCTGGAGGCTCAGACTGAGA 23199 Query 94490 CGGGTACGCCCTACATCTTGTTCAAGGA-CTCTGTCAACGCCAAGTCCAACCAGCAGCAC 94548 | || | || | || | | ||| || | ||| |||| |||| ||| ||| | | Sbjct 23200 CTGGCAACCCTTTTATGCTCTACAAAGACCACTG-CAACCGCAAGAGCAATCAGAAAAAT 23258 Query 94549 CTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGAC 94608 || || || || ||||| |||||||| |||||| ||||||| | | || || Sbjct 23259 CTAGGTACCATTCGCAGTTCGAACCTGTGCACTGAGATTATCGAGTACTGTGCCCCTGAT 23318 Query 94609 GAGATTGCTGTGTGTAACCT 94628 ||| | |||||||| ||||| Sbjct 23319 GAGGTCGCTGTGTGCAACCT 23338 Score = 131 bits (144), Expect = 2e-25 Identities = 200/280 (71%), Gaps = 4/280 (1%) Strand=Plus/Plus Query 95095 CTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCG 95154 || || || || |||||||| || ||| |||| ||||||| || |||||||| |||| Sbjct 23793 CTTCTAGTTGCACCCATGCCTACAGCCAGCACGTCGCAGATTCTGGGCAACAATGAGTGC 23852 Query 95155 TTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTC 95214 |||||||||| ||| |||||| | ||| | | || || || || || || |||| ||| Sbjct 23853 TTCGAACCCTACACATCCAACATTTACCAGCGCCGCGTTCTTGCTGGCGAGTTCCAGGTC 23912 Query 95215 ATCAACAAGCACCTCCTACGGGACCT-GACGTCTCTGGGTGTGTGGGGTGACAAGGTCAA 95273 ||||| |||||||| ||||| | || ||| ||| | ||| |||||| | || Sbjct 23913 GTCAACCCCTGGCTCCTACGTGACCTAGTCGA-TCTTGGTTTATGGTCTGACAATATGAA 23971 Query 95274 GAACCA-ACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACA 95332 ||| | | | | || | ||| |||||| | ||||||||| | || || | || | Sbjct 23972 GAATCGCATTATTGCG-GACAATGGCTCCATTCAGAACATCTCTAGCATTCCTGCTGATA 24030 Query 95333 TCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372 | || || || ||||||||||| |||||||| | ||||| Sbjct 24031 TTAAAGCTCTGTACAAGACCGTTTGGGAGATTTCCCAGCG 24070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494717269505640