Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016- 01-13] 959 sequences; 30,717,923 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq209 109 5e-19 seq753 89.7 5e-13 seq249 89.7 5e-13 >seq209 Length=70751 Score = 109 bits (120), Expect = 5e-19 Identities = 333/505 (66%), Gaps = 25/505 (5%) Strand=Plus/Minus Query 52344 AAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCG---CCACGCTGGCCGAGCGC 52400 ||||| | ||||| ||||||||||| | ||||| | | ||| | ||| ||||| Sbjct 41621 AAGGCCGACTGGGCTCTGAAGTGGATC---ACCGACAAGGAGTCGACGTTTGCCCAGCGC 41565 Query 52401 ATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTT 52460 | || ||||| || ||||||||| | ||||| || ||| ||| ||| ||||||| Sbjct 41564 CTAGTTGCCTTTGCTGCTGTCGAGGGCATCTTTTTCTCAGGCGCCTTCGCCTCCATCTTC 41505 Query 52461 TACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGC 52520 | | | | || | ||||| || ||||| ||| |||||| | || || || Sbjct 41504 TGGCTGCGCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCAAACGAGCTTATTTCTCGT 41445 Query 52521 GACGAAGGACTGCACACGGACTTTGCGTGCCT-CTACTACAAGACGCGCGTGACCGAAAA 52579 || || || |||||||| |||||||| ||||| || | | ||| | | ||| | Sbjct 41444 GATGAGGGCCTGCACACCGACTTTGCTTGCCTGCTGTT------CTCGCAT--CTGAACA 41393 Query 52580 ATTGGATTCGGACACGATCCTGAGC-----ATGTTCAAGGAGGCGGTGGCTATCGAAAAG 52634 | | | | | || | || || || ||| || || || | ||||| ||| Sbjct 41392 A-CCGCCCCAGCAAGGACCTTGTGCAAAAGATCATCACTGATGCCGTCGTGATCGAGAAG 41334 Query 52635 GAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGC 52694 ||||| | || | || ||||| || ||||| || |||||||| | ||| Sbjct 41333 GAGTTCCTGACCGAGGCTCTGCCCTGCGGTCTGCTAGGAATGAACGCTGATCTGATGAAG 41274 Query 52695 GAGTACATCGAGTTTGTGGCGGATCGTCTG-TTGGTGCAGCTCGGGCAGCCA-AAGTACT 52752 ||||||| |||||||| || || || ||| ||| ||| || |||| | | ||| | Sbjct 41273 CAGTACATTGAGTTTGTTGCTGACCGCCTGCTTGTTGC-TCT-AGGCAACGAGAAGGTGT 41216 Query 52753 TCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACT 52812 | || || || || || || ||| | ||||| ||||| | |||||||| |||| Sbjct 41215 ACCGTGCCACAAACCCCTTCGACTTCATGGAGAACATCTCGCTCGGCGGCAAGACTAACT 41156 Query 52813 TTTTCGAGAAGCGAGTCGGCGAGTA 52837 | ||||||||||| |||||||| || Sbjct 41155 TCTTCGAGAAGCGTGTCGGCGACTA 41131 >seq753 Length=27693 Score = 89.7 bits (98), Expect = 5e-13 Identities = 137/192 (71%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| |||||||||||||| || ||||| ||||| || || || || | ||| Sbjct 10741 CCTTCTGAATGTTGTAGTCAGACAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 10800 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTG 138542 | || ||||| |||||||| || || || || ||||| ||| | || | || |||| Sbjct 10801 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC-CTGAATCTTGGACTTGACATTG 10859 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | ||||| | ||||| ||||||| || | ||| ||||| || || || || || Sbjct 10860 -TCGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGAC 10918 Query 138603 AAAAATCTGCAT 138614 ||||||||||| Sbjct 10919 GAAAATCTGCAT 10930 >seq249 Length=99862 Score = 89.7 bits (98), Expect = 5e-13 Identities = 146/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| || | |||| ||| | | |||||||| ||||||||||||||| | Sbjct 88641 CCACCACGCAGGCGGAGCACTAGATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAC 88700 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| || || || || | |||| |||||||| ||||||||||| Sbjct 88701 AGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 88760 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| || | || | |||| ||| || | || || | ||||||| Sbjct 88761 ATACCCTCCTTGTC-CTGGATCTTAGACTTAACGTTG-TCAATAGTATCCGAGGACTCCA 88818 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCA 138592 |||||| || | || || ||||||| Sbjct 88819 CCTCGAGGGTGATGGTCTTGCCAGTCA 88845 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||||| ||| || || | | |||||||| || |||||||||||| Sbjct 88128 GCCACCACGCAGACGCAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGA 88187 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || ||||| || || || || | |||| |||||||| ||||||||||| Sbjct 88188 GAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGG 88247 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || || || ||| || || | |||| || | ||| || | ||||| | Sbjct 88248 GATACCCTCCTTATCCTGGATCTTGGACTTGACATTG-TCAATGGTATCAGAGGACTCGA 88306 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | |||| || | || || || |||| || || || || || ||||| Sbjct 88307 CTTCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 88355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496256451054480