Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016- 01-13] 959 sequences; 30,717,923 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq598 145 9e-30 seq209 125 9e-24 >seq598 Length=260485 Score = 145 bits (160), Expect = 9e-30 Identities = 845/1335 (63%), Gaps = 30/1335 (2%) Strand=Plus/Minus Query 115563 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 115622 ||||||||| ||||||||||| || | |||||| || | ||||| || | ||| Sbjct 24218 GTAGTACATGCCCGTCTTGAGACCTAGTTTCCAGCCAGCAAAGTGCATGCTGGTGATCTT 24159 Query 115623 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 115682 | | || ||| || |||| | ||| | | || ||||| || ||||| || Sbjct 24158 GCCCATGGTGGGATCTTTCATGTGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACC 24099 Query 115683 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTCCCACACAGTTCTGTA 115739 ||||| || ||||| | |||| | | || | || ||||| || || |||| Sbjct 24098 ACGATCAGCAGCCATTTG---CACAACTGTACGCTGGGAAATCTCCCAAACGGTCTTGTA 24042 Query 115740 GAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTGAC 115799 || ||||||||| | || || ||| || || || |||||| || | Sbjct 24041 CAGAGCTTTAATATCAGCAGGAATGCTAGAGATGTTCTGAATGGAGCCATTGTCCGCAAT 23982 Query 115800 CATGAGATCCTTCATATCCTTTGACCAGAGACCAA--TCTTCTTGAGATCCTCCACG-AG 115856 ||| ||| |||||||| | ||||| | ||||| || || || || ||| || Sbjct 23981 AATGCGATTCTTCATATTGTCAGACCATAAACCAAGATCGACT--AGGTC----ACGTAG 23928 Query 115857 GTGCTTA---TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGT 115913 | || ||||| || ||||| || || || ||| | | | || ||||||| Sbjct 23927 GAGCCAGGGGTTGACGACCTGGAACTCGCCAGCAAGAACGCGGCGCTGGTAAATGTTGGA 23868 Query 115914 CGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCAT 115973 ||||| || || |||||||||||||| |||| || || | ||| |||||| ||||| Sbjct 23867 TGTGTAGGGTTCGAAGCACTCATTGTTGCCCAGAATCTGCGACGTGCTGGCTGTAGGCAT 23808 Query 115974 GGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTC 116033 |||||| | ||||| ||||| | ||| | | |||| ||||| || | Sbjct 23807 GGGTGCAACTAGAAGAGAATTGCGTACACCATGCTGCTTAATCTTCTCCTTTAGAGAAGT 23748 Query 116034 CCAGTCGTA--GTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGG 116091 |||||| | | | | || | || | ||||||||||||||||| | ||| |||||| Sbjct 23747 CCAGTCCCACAGGTCA-CTAGGAGTCACA-TCCCACATATCAAACTGCAAGATGCCTTGG 23690 Query 116092 GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTC 116151 || | || || |||||| | || || | ||||| || || | ||| Sbjct 23689 GAGACAGGAGAACCCTCATAAGTTGAGTAAGTACCCTCCGTCTGGGCGATTTCCATTGAA 23630 Query 116152 GCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCAT-TGCCTTGGCCTC 116210 || || || ||||| || || || |||||||| | || | || | || | || Sbjct 23629 GCAGTTAGTGCGGCGTGGTAGATGGTTTCAAAAATCTGCTTGTTGAGCTGGCGTG-CTTC 23571 Query 116211 GTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAG 116270 ||| ||||| | | ||| || || | || || || || || ||||||| Sbjct 23570 AGGGGATTCAAAAGGCATGCGGAGAGCAAGGAAAGCGTCAGCCAGGCCCTGTACACCGAC 23511 Query 116271 GCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCT 116330 ||||| || || || | ||| || || |||| || || || || |||| Sbjct 23510 ACCAATGGGACGGTGGCGCATGTTGCTGTTGTGAGCTTCCTGGACAGGGTAGTGATTCAC 23451 Query 116331 ATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTA 116390 |||||| | | ||||| || ||||| | |||| ||| || ||||||| | Sbjct 23450 ATCGATGATGCGGTTTAGGTTGCGAACAACAACTTGGGTGACTTCGTGTAGCTTTTTAAA 23391 Query 116391 ATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACA 116450 ||| | | | | | | || | ||||||||| | || || || || || Sbjct 23390 GTCATACTCACCCTTGTTGTAGTCCACGAAGGAAGGAAGGGCTAGAGATGCTAGGTTGCA 23331 Query 116451 CACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTT 116510 ||||| | |||||| || |||||| ||||| || || |||| || ||||| Sbjct 23330 CACAGCGACCTCATCAGGGGCACAGTACTCGATAATCTCAGTGCACAGGTTCGAACTGCG 23271 Query 116511 AATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATA 116570 |||||| || | || || ||||| ||| ||| || || |||||||||||| | Sbjct 23270 AATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTGCAGTGGTCTTTGTAGAGCATAAA 23211 Query 116571 TGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACAT-CGGCGGCTGGCA 116629 || | || ||||| || || | || ||||| || | ||| | | | | | || | | Sbjct 23210 AGGGTTGCCAGTCTCAGTCTGAGCCTCCAGAATGGCATACCACAGTTTCTGGGCCTTG-A 23152 Query 116630 CAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCAC 116689 || | | || ||||||| |||||||||| || || |||||||||||||| | Sbjct 23151 CAACCATGCGACCGCGACCCTCCTTCTCGTACTTTTCATACAGAGCCTCAAACTCTTCGC 23092 Query 116690 CCACAGCC-TCTGAGAGCCCTGGTGCCTT-ATCTGGACAGAAGAGAGACCATTGACCACC 116747 | | ||| || | | || || || || || || || | ||||| ||| | || Sbjct 23091 C-ATAGCAATCCGCCAAGCCGGG-GCATTCATTGGGGCACATGAGAGTCCAGTCCTCATT 23034 Query 116748 CTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACA 116807 || |||||| ||||||||||| | ||| |||||| || ||| |||| || || ||| Sbjct 23033 CTTCTCAACACGCTTCATGAACAAGTCGCAGATCCACAGGGCCAAGAATAGGTCACGAGC 22974 Query 116808 GCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTG 116867 || ||||||| | || || || || || || | || || | || ||| || || Sbjct 22973 ACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAAGTCGAGGAACTCGAAGACATCAGCATG 22914 Query 116868 CCACGGTTCCAGGTA 116882 ||| || || || || Sbjct 22913 CCATGGCTCGAGATA 22899 >seq209 Length=70751 Score = 125 bits (138), Expect = 9e-24 Identities = 344/521 (66%), Gaps = 7/521 (1%) Strand=Plus/Plus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || ||| || ||||| ||||| || || || || || |||||| |||||| Sbjct 41418 AGCAAAGTCGGTGTGCAGGCCCTCATCACGAGAAATAAGCTCGTTTGAGAAGGTCAGACC 41477 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 ||||||||||| ||||| || |||||| || | || | ||| ||||| ||||| Sbjct 41478 AGGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCGCCTGAGAAAAAGAT 41537 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGT-ATCAA 127697 ||||| ||| || || |||| ||| |||| |||||| | || | |||| | Sbjct 41538 GCCCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCAAACG-TCGACTCCTTGTCGGTGA 41596 Query 127698 ACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAA 127757 |||||||| ||||| | ||||| ||| || || | || | || || | | Sbjct 41597 TCCACTTCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTCAATGGCATTGA 41656 Query 127758 AGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTT 127817 | || | | || || || || |||||||| | || || || || || |||| Sbjct 41657 ACAGGTATGTGCGTTGCGAGGGCTCCTTGATGTAGGTGTCAATCAGCAGCGAGTAGGTTT 41716 Query 127818 CGCCGTGGACCATTT-CATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATC 127876 | ||||| ||| ||| || | ||| | | ||||| |||| || ||| ||| Sbjct 41717 CAGAGTGGATGTTTTCCATCAT-GATCTGGAAACCATAGAAGCAGCGGGCCTCGGGGATC 41775 Query 127877 TGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCA 127936 || ||||| | | || | | || ||| || || || ||||| || ||||| Sbjct 41776 TGCACCTCGCCTGAGAAGCGCTCAACGAGATTTTCGTTGACGATGCCATCAGAGGCAGCA 41835 Query 127937 AAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAG 127993 || || || || || | ||||| | ||| || | | ||||| || | |||||| Sbjct 41836 AAGAAGGCAAGAATGTGGGAGATGAAGTACTGCTCGTCTTTGTTCAGACGGTTGTTCCAG 41895 Query 127994 TCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 |||| ||||||||| || ||||| | |||||| |||||||| Sbjct 41896 TCGTGGAGATCCTTAGACAGATCAATCTCCTCAGCAGTCCA 41936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613499845582440