Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016-
01-13] 959 sequences; 30,717,923 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq598 145 9e-30
seq209 125 9e-24
>seq598
Length=260485
Score = 145 bits (160), Expect = 9e-30
Identities = 845/1335 (63%), Gaps = 30/1335 (2%)
Strand=Plus/Minus
Query 115563 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 115622
||||||||| ||||||||||| || | |||||| || | ||||| || | |||
Sbjct 24218 GTAGTACATGCCCGTCTTGAGACCTAGTTTCCAGCCAGCAAAGTGCATGCTGGTGATCTT 24159
Query 115623 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 115682
| | || ||| || |||| | ||| | | || ||||| || ||||| ||
Sbjct 24158 GCCCATGGTGGGATCTTTCATGTGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACC 24099
Query 115683 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTCCCACACAGTTCTGTA 115739
||||| || ||||| | |||| | | || | || ||||| || || ||||
Sbjct 24098 ACGATCAGCAGCCATTTG---CACAACTGTACGCTGGGAAATCTCCCAAACGGTCTTGTA 24042
Query 115740 GAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTGAC 115799
|| ||||||||| | || || ||| || || || |||||| || |
Sbjct 24041 CAGAGCTTTAATATCAGCAGGAATGCTAGAGATGTTCTGAATGGAGCCATTGTCCGCAAT 23982
Query 115800 CATGAGATCCTTCATATCCTTTGACCAGAGACCAA--TCTTCTTGAGATCCTCCACG-AG 115856
||| ||| |||||||| | ||||| | ||||| || || || || ||| ||
Sbjct 23981 AATGCGATTCTTCATATTGTCAGACCATAAACCAAGATCGACT--AGGTC----ACGTAG 23928
Query 115857 GTGCTTA---TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGT 115913
| || ||||| || ||||| || || || ||| | | | || |||||||
Sbjct 23927 GAGCCAGGGGTTGACGACCTGGAACTCGCCAGCAAGAACGCGGCGCTGGTAAATGTTGGA 23868
Query 115914 CGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCAT 115973
||||| || || |||||||||||||| |||| || || | ||| |||||| |||||
Sbjct 23867 TGTGTAGGGTTCGAAGCACTCATTGTTGCCCAGAATCTGCGACGTGCTGGCTGTAGGCAT 23808
Query 115974 GGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTC 116033
|||||| | ||||| ||||| | ||| | | |||| ||||| || |
Sbjct 23807 GGGTGCAACTAGAAGAGAATTGCGTACACCATGCTGCTTAATCTTCTCCTTTAGAGAAGT 23748
Query 116034 CCAGTCGTA--GTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGG 116091
|||||| | | | | || | || | ||||||||||||||||| | ||| ||||||
Sbjct 23747 CCAGTCCCACAGGTCA-CTAGGAGTCACA-TCCCACATATCAAACTGCAAGATGCCTTGG 23690
Query 116092 GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTC 116151
|| | || || |||||| | || || | ||||| || || | |||
Sbjct 23689 GAGACAGGAGAACCCTCATAAGTTGAGTAAGTACCCTCCGTCTGGGCGATTTCCATTGAA 23630
Query 116152 GCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCAT-TGCCTTGGCCTC 116210
|| || || ||||| || || || |||||||| | || | || | || | ||
Sbjct 23629 GCAGTTAGTGCGGCGTGGTAGATGGTTTCAAAAATCTGCTTGTTGAGCTGGCGTG-CTTC 23571
Query 116211 GTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAG 116270
||| ||||| | | ||| || || | || || || || || |||||||
Sbjct 23570 AGGGGATTCAAAAGGCATGCGGAGAGCAAGGAAAGCGTCAGCCAGGCCCTGTACACCGAC 23511
Query 116271 GCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCT 116330
||||| || || || | ||| || || |||| || || || || ||||
Sbjct 23510 ACCAATGGGACGGTGGCGCATGTTGCTGTTGTGAGCTTCCTGGACAGGGTAGTGATTCAC 23451
Query 116331 ATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTA 116390
|||||| | | ||||| || ||||| | |||| ||| || ||||||| |
Sbjct 23450 ATCGATGATGCGGTTTAGGTTGCGAACAACAACTTGGGTGACTTCGTGTAGCTTTTTAAA 23391
Query 116391 ATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACA 116450
||| | | | | | | || | ||||||||| | || || || || ||
Sbjct 23390 GTCATACTCACCCTTGTTGTAGTCCACGAAGGAAGGAAGGGCTAGAGATGCTAGGTTGCA 23331
Query 116451 CACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTT 116510
||||| | |||||| || |||||| ||||| || || |||| || |||||
Sbjct 23330 CACAGCGACCTCATCAGGGGCACAGTACTCGATAATCTCAGTGCACAGGTTCGAACTGCG 23271
Query 116511 AATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATA 116570
|||||| || | || || ||||| ||| ||| || || |||||||||||| |
Sbjct 23270 AATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTGCAGTGGTCTTTGTAGAGCATAAA 23211
Query 116571 TGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACAT-CGGCGGCTGGCA 116629
|| | || ||||| || || | || ||||| || | ||| | | | | | || | |
Sbjct 23210 AGGGTTGCCAGTCTCAGTCTGAGCCTCCAGAATGGCATACCACAGTTTCTGGGCCTTG-A 23152
Query 116630 CAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCAC 116689
|| | | || ||||||| |||||||||| || || |||||||||||||| |
Sbjct 23151 CAACCATGCGACCGCGACCCTCCTTCTCGTACTTTTCATACAGAGCCTCAAACTCTTCGC 23092
Query 116690 CCACAGCC-TCTGAGAGCCCTGGTGCCTT-ATCTGGACAGAAGAGAGACCATTGACCACC 116747
| | ||| || | | || || || || || || || | ||||| ||| | ||
Sbjct 23091 C-ATAGCAATCCGCCAAGCCGGG-GCATTCATTGGGGCACATGAGAGTCCAGTCCTCATT 23034
Query 116748 CTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACA 116807
|| |||||| ||||||||||| | ||| |||||| || ||| |||| || || |||
Sbjct 23033 CTTCTCAACACGCTTCATGAACAAGTCGCAGATCCACAGGGCCAAGAATAGGTCACGAGC 22974
Query 116808 GCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTG 116867
|| ||||||| | || || || || || || | || || | || ||| || ||
Sbjct 22973 ACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAAGTCGAGGAACTCGAAGACATCAGCATG 22914
Query 116868 CCACGGTTCCAGGTA 116882
||| || || || ||
Sbjct 22913 CCATGGCTCGAGATA 22899
>seq209
Length=70751
Score = 125 bits (138), Expect = 9e-24
Identities = 344/521 (66%), Gaps = 7/521 (1%)
Strand=Plus/Plus
Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578
|||||| || ||| || ||||| ||||| || || || || || |||||| ||||||
Sbjct 41418 AGCAAAGTCGGTGTGCAGGCCCTCATCACGAGAAATAAGCTCGTTTGAGAAGGTCAGACC 41477
Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638
||||||||||| ||||| || |||||| || | || | ||| ||||| |||||
Sbjct 41478 AGGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCGCCTGAGAAAAAGAT 41537
Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGT-ATCAA 127697
||||| ||| || || |||| ||| |||| |||||| | || | |||| |
Sbjct 41538 GCCCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCAAACG-TCGACTCCTTGTCGGTGA 41596
Query 127698 ACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAA 127757
|||||||| ||||| | ||||| ||| || || | || | || || | |
Sbjct 41597 TCCACTTCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTCAATGGCATTGA 41656
Query 127758 AGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTT 127817
| || | | || || || || |||||||| | || || || || || ||||
Sbjct 41657 ACAGGTATGTGCGTTGCGAGGGCTCCTTGATGTAGGTGTCAATCAGCAGCGAGTAGGTTT 41716
Query 127818 CGCCGTGGACCATTT-CATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATC 127876
| ||||| ||| ||| || | ||| | | ||||| |||| || ||| |||
Sbjct 41717 CAGAGTGGATGTTTTCCATCAT-GATCTGGAAACCATAGAAGCAGCGGGCCTCGGGGATC 41775
Query 127877 TGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCA 127936
|| ||||| | | || | | || ||| || || || ||||| || |||||
Sbjct 41776 TGCACCTCGCCTGAGAAGCGCTCAACGAGATTTTCGTTGACGATGCCATCAGAGGCAGCA 41835
Query 127937 AAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAG 127993
|| || || || || | ||||| | ||| || | | ||||| || | ||||||
Sbjct 41836 AAGAAGGCAAGAATGTGGGAGATGAAGTACTGCTCGTCTTTGTTCAGACGGTTGTTCCAG 41895
Query 127994 TCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034
|||| ||||||||| || ||||| | |||||| ||||||||
Sbjct 41896 TCGTGGAGATCCTTAGACAGATCAATCTCCTCAGCAGTCCA 41936
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613499845582440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |