Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016- 01-13] 959 sequences; 30,717,923 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq598 140 5e-28 >seq598 Length=260485 Score = 140 bits (154), Expect = 5e-28 Identities = 383/579 (66%), Gaps = 6/579 (1%) Strand=Plus/Minus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCA-CGGCAGGCCTGCTT-CTCAGATAGTACATG 203896 || ||| || ||||| || || | || || | |||| ||||| | | || ||||||||| Sbjct 24266 CTGGTCTACAGTGAATTGGATAG-GTGCAGCAGCAG-CCTGCGTACGCAAGTAGTACATG 24209 Query 203897 CCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG 203956 || ||||| || || | ||| || | ||||||| | | |||| || | || Sbjct 24208 CCCGTCTTGAGACCTAGTTTCCAGCCAGCAAAGTGCATGCTGGTGATCTTGCCCATGGTG 24149 Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCG 204016 || || |||||||||||| |||||||| |||||| ||||||| | ||||| || Sbjct 24148 GGATCTTTCATGTGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACCACGATCAGCA 24089 Query 204017 GCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTG 204076 ||||| | | || || ||| ||||||||||| || |||||| ||| || | | Sbjct 24088 GCCATTTGCACAACTGTACGCTGGGAAATCTCCCAAACGGTCTTGTACAGAGCTTTAATA 24029 Query 204077 TGTTGAGGCACATCTTCCCACGTCCTGA-TCGAGCCGTTGTCGGCCATCAGTCTCATCCT 204135 | ||| | || | || |||| | ||||| ||||| || || | | || | Sbjct 24028 TCAGCAGGAATG-CTAGAGATGTTCTGAATGGAGCCATTGTCCGCAATAATGCGATTCTT 23970 Query 204136 CGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGAT 204195 | | | || ||| | || | || || || || | || |||||||| || Sbjct 23969 CATATTGTCAGACCATAAACCAAGATCGACTAGGTCACGTAGGAGCCAGGGGTTGACGAC 23910 Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 ||| || || || | || || | || | | | |||| ||| | |||||||| Sbjct 23909 CTGGAACTCGCCAGCAAGAACGCGGCGCTGGTAAATGTTGGATGTGTAGGGTTCGAAGCA 23850 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 ||| |||||||| | |||||| | |||||||| || |||||||| || | || || || Sbjct 23849 CTCATTGTTGCCCAGAATCTGCGACGTGCTGGCTGTAGGCATGGGTGCAACTAGAAGAGA 23790 Query 204316 GTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACT 204375 ||||| ||||| | | | | | | ||| ||||| |||||||| || |||| Sbjct 23789 ATTGCGTACACCATGCTGCTTAATCTTCTCCTTTAGAGAAGTCCAGTCCCACAGGTCACT 23730 Query 204376 GGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTG 204414 || |||| ||||||| || ||||| ||||||||||| Sbjct 23729 AGGAGTCACATCCCACATATCAAACTGCAAGATGCCTTG 23691 Score = 87.8 bits (96), Expect = 3e-12 Identities = 226/338 (67%), Gaps = 6/338 (2%) Strand=Plus/Minus Query 205060 CTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACA 205119 |||||| ||| ||||| ||| |||| || || || ||| || || || || Sbjct 23126 CTCGTACTTTTCATACAGAGCCTCAAACTCTTCGCCATAGCAATCCGCCAAGCCGGGGCA 23067 Query 205120 TTTTTTGGGACACATCAGAGACCACATCTGATCGTCTT-TCACC-CTCTCCATAAACAGG 205177 || ||||| ||||| |||| ||| || || |||| ||| | | || ||| |||| | Sbjct 23066 TTCATTGGGGCACATGAGAGTCCAGTCCTCAT--TCTTCTCAACACGCTTCATGAACAAG 23009 Query 205178 TCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTC 205237 |||| |||||||||| | | || || ||||| || | | | | || | ||| ||||| Sbjct 23008 TCGCAGATCCACAGGGCCAAGAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTC 22949 Query 205238 TTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCAT 205296 || ||||| || || || | | || || ||||| ||||| | | | ||| | Sbjct 22948 TTGCGTAAGTCGAGG-AACTCGAAGACATCAGCATGCCATGGCTCGAGATAAATGGCAAA 22890 Query 205297 TGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCG 205356 || || || | |||||| ||||||||||| || || | | ||||||||| || Sbjct 22889 GGCTCCAGGTCGCTTGTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACG 22830 Query 205357 CAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGC 205394 ||||| || || | ||||| | || ||||| |||| Sbjct 22829 TAGCATGGGAACGATGCCGTTCGAAGTACCGTTAGTGC 22792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795145668077040