Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016-
01-13] 959 sequences; 30,717,923 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq598 140 5e-28
>seq598
Length=260485
Score = 140 bits (154), Expect = 5e-28
Identities = 383/579 (66%), Gaps = 6/579 (1%)
Strand=Plus/Minus
Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCA-CGGCAGGCCTGCTT-CTCAGATAGTACATG 203896
|| ||| || ||||| || || | || || | |||| ||||| | | || |||||||||
Sbjct 24266 CTGGTCTACAGTGAATTGGATAG-GTGCAGCAGCAG-CCTGCGTACGCAAGTAGTACATG 24209
Query 203897 CCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG 203956
|| ||||| || || | ||| || | ||||||| | | |||| || | ||
Sbjct 24208 CCCGTCTTGAGACCTAGTTTCCAGCCAGCAAAGTGCATGCTGGTGATCTTGCCCATGGTG 24149
Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCG 204016
|| || |||||||||||| |||||||| |||||| ||||||| | ||||| ||
Sbjct 24148 GGATCTTTCATGTGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACCACGATCAGCA 24089
Query 204017 GCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTG 204076
||||| | | || || ||| ||||||||||| || |||||| ||| || | |
Sbjct 24088 GCCATTTGCACAACTGTACGCTGGGAAATCTCCCAAACGGTCTTGTACAGAGCTTTAATA 24029
Query 204077 TGTTGAGGCACATCTTCCCACGTCCTGA-TCGAGCCGTTGTCGGCCATCAGTCTCATCCT 204135
| ||| | || | || |||| | ||||| ||||| || || | | || |
Sbjct 24028 TCAGCAGGAATG-CTAGAGATGTTCTGAATGGAGCCATTGTCCGCAATAATGCGATTCTT 23970
Query 204136 CGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGAT 204195
| | | || ||| | || | || || || || | || |||||||| ||
Sbjct 23969 CATATTGTCAGACCATAAACCAAGATCGACTAGGTCACGTAGGAGCCAGGGGTTGACGAC 23910
Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255
||| || || || | || || | || | | | |||| ||| | ||||||||
Sbjct 23909 CTGGAACTCGCCAGCAAGAACGCGGCGCTGGTAAATGTTGGATGTGTAGGGTTCGAAGCA 23850
Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315
||| |||||||| | |||||| | |||||||| || |||||||| || | || || ||
Sbjct 23849 CTCATTGTTGCCCAGAATCTGCGACGTGCTGGCTGTAGGCATGGGTGCAACTAGAAGAGA 23790
Query 204316 GTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACT 204375
||||| ||||| | | | | | | ||| ||||| |||||||| || ||||
Sbjct 23789 ATTGCGTACACCATGCTGCTTAATCTTCTCCTTTAGAGAAGTCCAGTCCCACAGGTCACT 23730
Query 204376 GGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTG 204414
|| |||| ||||||| || ||||| |||||||||||
Sbjct 23729 AGGAGTCACATCCCACATATCAAACTGCAAGATGCCTTG 23691
Score = 87.8 bits (96), Expect = 3e-12
Identities = 226/338 (67%), Gaps = 6/338 (2%)
Strand=Plus/Minus
Query 205060 CTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACA 205119
|||||| ||| ||||| ||| |||| || || || ||| || || || ||
Sbjct 23126 CTCGTACTTTTCATACAGAGCCTCAAACTCTTCGCCATAGCAATCCGCCAAGCCGGGGCA 23067
Query 205120 TTTTTTGGGACACATCAGAGACCACATCTGATCGTCTT-TCACC-CTCTCCATAAACAGG 205177
|| ||||| ||||| |||| ||| || || |||| ||| | | || ||| |||| |
Sbjct 23066 TTCATTGGGGCACATGAGAGTCCAGTCCTCAT--TCTTCTCAACACGCTTCATGAACAAG 23009
Query 205178 TCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTC 205237
|||| |||||||||| | | || || ||||| || | | | | || | ||| |||||
Sbjct 23008 TCGCAGATCCACAGGGCCAAGAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTC 22949
Query 205238 TTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCAT 205296
|| ||||| || || || | | || || ||||| ||||| | | | ||| |
Sbjct 22948 TTGCGTAAGTCGAGG-AACTCGAAGACATCAGCATGCCATGGCTCGAGATAAATGGCAAA 22890
Query 205297 TGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCG 205356
|| || || | |||||| ||||||||||| || || | | ||||||||| ||
Sbjct 22889 GGCTCCAGGTCGCTTGTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACG 22830
Query 205357 CAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGC 205394
||||| || || | ||||| | || ||||| ||||
Sbjct 22829 TAGCATGGGAACGATGCCGTTCGAAGTACCGTTAGTGC 22792
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795145668077040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |