Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016- 01-13] 959 sequences; 30,717,923 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq330 132 1e-25 seq249 120 7e-22 seq753 113 1e-19 >seq330 Length=314808 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||||||||||||||| || |||||||| |||| ||||||||| | || ||| Sbjct 237237 CGCAGGCGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTG 237178 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| || || ||||| | |||||||||||||| ||| || Sbjct 237177 CGGCCATCCTCAAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCC 237118 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| |||| ||||| | | || || |||| Sbjct 237117 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAGG 237058 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAA 199621 || || ||||||||||| || || || || ||| Sbjct 237057 GTAATGGTCTTACCCGTCAGGGTCTTGACGAAA 237025 >seq249 Length=99862 Score = 120 bits (132), Expect = 7e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| | ||| ||||| || || || || | ||||||||| | | || Sbjct 88363 CGCAGACGCAGGACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCGGAAAGGGTG 88422 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || ||||||||||||||||||||||||||||||||||||||| ||| || Sbjct 88423 CGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCC 88482 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| || | |||||| | | || || || | Sbjct 88483 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAGGACTCGACTTCGAGG 88542 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 || || ||||| || || || || || |||| Sbjct 88543 GTAATGGTCTTTCCGGTAAGGGTCTTGACAA 88573 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | ||| ||||| |||||||| |||| ||||||||| | | || Sbjct 88135 CGCAGACGCAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTG 88194 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || ||||||||||| ||||||||||||||||||||||||||| || || Sbjct 88195 CGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCC 88254 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || || | ||| || | | || || || | Sbjct 88255 TCCTTATCCTGGATCTTGGACTTGACATTGTCAATGGTATCAGAGGACTCGACTTCGAGG 88314 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| ||||| | || || || || ||||| Sbjct 88315 GTAATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTG 88352 Score = 109 bits (120), Expect = 1e-18 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || |||||||| |||||||| || | ||||||||| | || || | ||||| Sbjct 88656 AGCACTAGATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCC 88715 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||| ||||||||||||||||||||||||||| || || || ||| Sbjct 88716 TCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCC 88775 Query 199538 TGAATCTT 199545 || ||||| Sbjct 88776 TGGATCTT 88783 >seq753 Length=27693 Score = 113 bits (124), Expect = 1e-19 Identities = 137/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| || | ||||||||||| || || | ||||| ||||||||||| || ||||||| Sbjct 10741 CCTTCTGAATGTTGTAGTCAGACAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 10800 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | || |||||||||||||| ||| || || ||||||||||| ||| || | Sbjct 10801 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGT 10860 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 ||| ||||| | | || || || | || |||||||||||||| || || || || | Sbjct 10861 CGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGA 10920 Query 199620 AAATTTG 199626 |||| || Sbjct 10921 AAATCTG 10927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178907114369253