Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016- 01-13] 959 sequences; 30,717,923 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq234 190 3e-43 seq844 168 8e-37 seq350 152 7e-32 >seq234 Length=175085 Score = 190 bits (210), Expect = 3e-43 Identities = 281/398 (71%), Gaps = 0/398 (0%) Strand=Plus/Minus Query 7463 TCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCA 7522 || |||||||||| || || || || ||||| | ||||| || |||||||| | ||| Sbjct 65509 TCCTCACCACCCAGATGGGTGTCACCAGCGGTGGACTTGACCTCGAAGATACCATCCTCA 65450 Query 7523 ATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTA 7582 ||| | | || ||| ||||| || |||||||||||||| || || || || ||||| Sbjct 65449 ATGGTCAGCAGCGAGACATCGAAAGTACCACCACCCAGATCGAAGATCAGGACGTTGCGC 65390 Query 7583 TCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATA 7642 || | || ||||| || |||||||| || || || || || || || || ||||| Sbjct 65389 TCACCCTCGACCTTCTTGTCAAGACCGTAGGCAATGGCAGCAGCAGTGGGCTCGTTAATG 65330 Query 7643 ATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAA 7702 ||||| || ||||| ||||||||| | | || || || || || || || || Sbjct 65329 ATACGCAGGACGTTCAAGCCAGCAATGAGACCAGAGTCCTTGGTAGCCTGACGCTGAGAG 65270 Query 7703 TCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGAT 7762 ||||| |||||||| ||||| || | ||| |||| |||| | | || || || || Sbjct 65269 TCGTTGAAGTAGGCGGGGACAGTAATGACAGCGTTGTTGACATCGGTGCCCAGGTAGGAC 65210 Query 7763 TCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT 7822 || || | || ||| ||||| |||||||| || || |||||||||| | ||||| Sbjct 65209 TCGGCAGTCTCACGCATCTTGGTCAGAACCATGGAGGAGATCTCTTCAGGGGTGAACTGC 65150 Query 7823 TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTT 7860 || || ||||| || || || || || || || || || Sbjct 65149 TTGGTCTCACCCTTGAACTCGACCTCGATAATAGGCTT 65112 >seq844 Length=726305 Score = 168 bits (186), Expect = 8e-37 Identities = 255/360 (71%), Gaps = 7/360 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| |||||||||| ||| || || || || || || ||| ||||||| ||| Sbjct 475641 TCGAAATCCTCACCACCCAGGTGAGTGTCACCAGCAGTAGCGCGGACCTCAAAGACACCA 475700 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTA-- 7574 | ||||| | | ||||||||||| ||||||||||| || || | | || | Sbjct 475701 CTCTCAATAGACAGAAGAGAAACATCAAAAGTACCACCACCAAGATCGTACACGATGATC 475760 Query 7575 ---CGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTG 7631 || ||| | || ||| || |||| || |||||||| || || || || ||||| | Sbjct 475761 TGGCGCTCG-GTGGT-GTCGTTAGTCTTGTCCAGACCGTAGGCAATGGCAGCGGCCGTAG 475818 Query 7632 GTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTT 7691 | || || | || ||||||| |||||| || |||||||| | ||||| || || || | Sbjct 475819 GCTCGTTGACAACACGAAGAATGTTCAGACCGGCAATAGTACCAGCATCCTTGGTAGCCT 475878 Query 7692 GTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTAC 7751 | || || | ||| || |||||||| ||||| || ||||| |||| ||||| ||| | Sbjct 475879 GACGCTGAGCATCATTGAAGTAGGCAGGGACGGTGACGACGGCGTGAGTGACGGTCTGGC 475938 Query 7752 CGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811 | || || || || |||| || ||||| ||| |||| ||| | || | ||| |||| Sbjct 475939 CAAGGTAAGACTCGGCGACTTCCTTCATCTTGCCTAGAATCATGGCAGAGACCTCCTCAG 475998 >seq350 Length=444183 Score = 152 bits (168), Expect = 7e-32 Identities = 337/505 (67%), Gaps = 9/505 (2%) Strand=Plus/Plus Query 7304 TCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCC 7363 || || |||||||| || || || ||||| | || ||||| || ||||| || || Sbjct 158871 TCGATCTCAATGGTGGTCTGGGCACCGGAAGAAAGGGTACGCTTGGCACGCTCGCAAGCA 158930 Query 7364 GTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTA 7423 || || | ||| || |||||||| | | | ||| | || ||||| || || | Sbjct 158931 GTGCGGAGACGGCGCAGGGCACGAGCATCAGAGGACAGGTCCTTCTTGGTCTTGCGGGTG 158990 Query 7424 AACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTA 7483 || || | | ||| || || | | ||||| || | |||||||| ||| || Sbjct 158991 AAGTCCTTCTTGCAGTACTCCAGCAGGTTGGTGTCGAAGTCCTGACCACCCAGGTGAGTG 159050 Query 7484 TCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCA 7543 || || ||||| || ||||| |||| ||| || | |||||| | || || ||||| Sbjct 159051 TCACCAGCGGTAGCCTTGACGGTGAAGACACCACCCTGAATGTTCAGCAGGGAGACATCG 159110 Query 7544 AACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCG 7603 || |||||||||||||| || | || || ||||| || | || | |||| | Sbjct 159111 AAAGTACCACCACCCAGATCGTAGATCAGGACGTTGCGCTCCTTCTC---GGACTTACCA 159167 Query 7604 ------AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTC 7657 |||||||| || || || || || || || || || || ||||| ||| |||| Sbjct 159168 GCACCCAGACCGTAGGCAATGGCAGCGGCGGTAGGCTCGTTGATGATACGCAGAACGTTC 159227 Query 7658 AGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCC 7717 |||||||| || | | ||||| || || || || || || ||||| |||||||| Sbjct 159228 AGGCCAGCGATGGCACCGGCATCCTTGGTAGCCTGACGCTGGTTGTCGTTGAAGTAGGCA 159287 Query 7718 GGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTC 7777 ||||| || | ||| || | | ||| ||||| ||||| | | || || || || ||| Sbjct 159288 GGGACGGTGATGACAGCCTTCTCGACCTTCTTGCCGAGCTTGGCCTCAGCAATCTCCTTC 159347 Query 7778 ATTTTGGTAAGAACCATCGATGAAA 7802 || || |||||||| || |||| Sbjct 159348 ATCTTCAGCAGAACCATGGAAGAAA 159372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635125186345560