Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016- 01-13] 959 sequences; 30,717,923 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq249 116 2e-21 seq753 102 5e-17 >seq249 Length=99862 Score = 116 bits (128), Expect = 2e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || ||||||||||||||| ||||| |||||| | || |||| || Sbjct 88375 ACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCA 88434 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| |||||||| || || || || |||||||| | || | ||||||||||| Sbjct 88435 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGG 88494 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | || || ||| || |||| ||| ||||| ||| Sbjct 88495 ATCTTGGACTTGACGTTGTCAATGGTGTCGGAGGACTCGACTTCGAGGGTAATGGTCTTT 88554 Query 34953 CCCGTGAGAGTCTTCACAA 34971 || || || ||||| |||| Sbjct 88555 CCGGTAAGGGTCTTGACAA 88573 Score = 98.7 bits (108), Expect = 6e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 || ||||||||||| || || ||||| ||||| ||||| || ||| | || |||| Sbjct 88143 CAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 88202 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || ||||| ||||| || || || || || |||||||| | || | |||||||| || Sbjct 88203 CTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTATC 88262 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| ||||| | || | ||| || ||| || |||| ||| ||||| Sbjct 88263 CTGGATCTTGGACTTGACATTGTCAATGGTATCAGAGGACTCGACTTCGAGGGTAATGGT 88322 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || ||||| | ||||| || ||||| |||||| Sbjct 88323 CTTGCCCGTCAAGGTCTTGACGAAGATTTGCATA 88356 >seq753 Length=27693 Score = 102 bits (112), Expect = 5e-17 Identities = 141/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||||||||| ||||| || ||| | || |||| |||||||| || || || || || Sbjct 10743 TTCTGAATGTTGTAGTCAGACAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 10802 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 || || |||||||| | || | ||||||||||| |||||| ||||| || | Sbjct 10803 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGAC--AT--T 10858 Query 34914 ATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 ||||| || || |||||| |||| ||| || || || ||||| || ||||| || Sbjct 10859 GTCGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGAC 10918 Query 34970 AAAGATCTGCATATT 34984 || |||||||| || Sbjct 10919 GAAAATCTGCATCTT 10933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324629805743352