Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016- 01-13] 959 sequences; 30,717,923 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq598 131 2e-25 >seq598 Length=260485 Score = 131 bits (144), Expect = 2e-25 Identities = 487/760 (64%), Gaps = 6/760 (1%) Strand=Plus/Minus Query 47876 AAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTAT 47935 ||| |||| ||||||||| || || ||||| ||||||| || | || | || || Sbjct 23354 AAGGGCTAGAGATGCTAGGTTGCACACAGCGACCTCATCAGGGGCACAGTACTCGATAAT 23295 Query 47936 TTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTT 47995 |||| || || || || || ||||| | ||||| ||||| | ||| Sbjct 23294 CTCAGTGCACAGGTTCGAACTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTT 23235 Query 47996 ACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGA 48055 || ||| ||||| ||||||||||| | ||||| || |||||| || | || | Sbjct 23234 GCAGTGGTCTTTGTAGAGCATAAAAGGGTTGCCAGTCTCAGTCTGAGCCTCCAGAATGGC 23175 Query 48056 TTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGT 48115 | ||| | || ||||| | ||| | | | | || | ||||| || Sbjct 23174 ATACCACAGTTTCTGGGCCTTGACAACCATGCGACCGCGACCCTCCTTCTCGTACTTTTC 23115 Query 48116 ATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACA 48175 ||| | |||||| || || ||||| || | || || || |||||||| || || Sbjct 23114 ATACAGAGCCTCAAACTCTTCGCCATAGCAATCCGCCAAGCCGGGGCATTCATTGGGGCA 23055 Query 48176 CATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAG 48235 ||| | | ||| ||||||| || | || | |||| || | || ||||| || Sbjct 23054 CATGAGAGTCCAGTCCTCATTCTTCTCAACACGCTTCATGAACAAGTCGCAGATCCACAG 22995 Query 48236 AGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTT-TAAGTTCAA 48294 || | |||| || | || | | |||||| || || ||| | ||||| | | Sbjct 22994 GGCCAAGAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAAGT-CGA 22936 Query 48295 GAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTT 48354 | || || | | ||||||||||||||| || | ||| || || | | || ||||| | Sbjct 22935 GGAACTCGAAGACATCAGCATGCCATGGCTCGAGATAAATGGCAAAGGCTCCAGGTCGCT 22876 Query 48355 TATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAA 48414 | || || || || || | ||| | ||| || ||||| |||| | || ||| || || | Sbjct 22875 TGTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGTAGCATGGGAACGA 22816 Query 48415 TACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATA--TTACT 48472 | || || || |||| || || || | ||| ||| ||| | || | ||| | Sbjct 22815 TGCCGTTCGAAGTACCGTTAGTGCCAGCAATGTAAGAGCCAGTGGCACGAATACGGTGAA 22756 Query 48473 AATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATC 48532 |||| | ||| |||||||| ||||| || || || | ||||| || |||||||| Sbjct 22755 CATTG--AGACCGATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATC 22698 Query 48533 ATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGG 48592 ||||| || || || || ||||| |||| | | ||| ||||| ||||| || | Sbjct 22697 GTAAATGCCCTCGATGCTGTCATCCTTCATGTCGACTAGGAAACATGAAGACAACTGAGC 22638 Query 48593 ATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGA 48632 || ||| || | |||||| | || || ||||| ||| Sbjct 22637 CTGGGGAGTACCGGCATTAAAGAGCGTAGGTGATGCGTGA 22598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562102061720760