Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016- 01-13] 959 sequences; 30,717,923 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq281 86.0 5e-12 >seq281 Length=219731 Score = 86.0 bits (94), Expect = 5e-12 Identities = 248/379 (65%), Gaps = 2/379 (1%) Strand=Plus/Plus Query 30008 TGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGA 30067 |||||||||| || || ||||| ||| || |||||||| ||| || |||| Sbjct 25246 TGTGGCACGGTGGCAGCGCCATCTTCTTCAAATCCGCAGGGTTCCAAGCGGTCATAATGA 25305 Query 30068 TGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCC 30127 | |||| || | |||||| || ||| || | | | | ||||||||| || | Sbjct 25306 TACGCCGATCGTACGGGTTGGTCTTGAGTTTGTGGATGACTTCAGCCAGCTGATCAACAC 25365 Query 30128 CCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGA 30187 | |||| ||||||| | | ||| ||||| ||||||||||| | |||||| | Sbjct 25366 CTTGACCCGTATAGTCTGTCTTGGCATCCACATACTCGGCTCCGAAATGGCGCCACTGAA 25425 Query 30188 ACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAA 30247 | ||||| || || || || || || |||| | ||| | | ||| || || | || Sbjct 25426 AGCCGTATACAGGCCCTAGATCGCCAACTTCACGGTGGCCTAGACCCGCGTTATCAAGAA 25485 Query 30248 AGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGT 30307 | || | || |||||| | ||||||||||| || || |||| ||| | || Sbjct 25486 ACTCGCGCGAGCCGTTGCCATCCCAGATCTTGACACCAGCCTCGCTCAGCGGAATTGATG 25545 Query 30308 TTGTG-GACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTC 30366 |||| |||||| | |||||| || ||||| | | || ||| || || | Sbjct 25546 ATGTGCTACCCTC-AATGAACCATAGTAGCTCGGCGATGATGGCACGTGTGAATACTCGT 25604 Query 30367 TTGGTCGTGAGGAGGGGAA 30385 ||||| |||||||| |||| Sbjct 25605 TTGGTGGTGAGGAGAGGAA 25623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408612824154107