Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016-
01-13] 959 sequences; 30,717,923 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq209 221 2e-52
seq598 163 5e-35
>seq209
Length=70751
Score = 221 bits (244), Expect = 2e-52
Identities = 573/862 (66%), Gaps = 34/862 (4%)
Strand=Plus/Minus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||| |||||||||||||||| | ||| |||||| || || ||||||||||||
Sbjct 41972 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACTGCTGAGGAGATTGATCTG 41913
Query 25537 GCCAAGGACATGGACGGCTGGTACGC---TCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593
| ||||| | ||| |||| || ||| ||||||||||||| | || ||
Sbjct 41912 TCTAAGGATCTCCACGACTGGAACAACCGTCTGAACAAAGACGAGCAGTACTTCATCTCC 41853
Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653
|| | | || |||||||| ||||||||||| || || ||||| ||||| ||| |
Sbjct 41852 CACATTCTTGCCTTCTTTGCTGCCTCTGATGGCATCGTCAACGAAAATCTCGTTGAGCGC 41793
Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713
||| | | || |||||| | |||||| || ||||| ||||||||||| ||
Sbjct 41792 TTCTCAGGCGAGGTGCAGATCCCCGAGGCCCGCTGCTTCTATGGTTTCCAGATCATGATG 41733
Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGA--CG 25768
||||| | |||||||| || | ||| ||||| || ||||| | || |
Sbjct 41732 GAAAACATCCACTCTGAAACCTACTC---GCTGCTGATTGACACCTACATCAAGGAGCCC 41676
Query 25769 TCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCAC-ATACCCAGCATCAAGAGGAAG 25827
|||| | | || ||||| |||||| || ||| || ||| ||||| | |||
Sbjct 41675 TCGCAACGC-ACATAC-CTGTTCAATGCCATTGA-CACTATTCCCTGCATCCGCCGCAAG 41619
Query 25828 GCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTA 25887
|| ||||| |||||||||||| | | || | ||||||| | |||| || ||
Sbjct 41618 GCCGACTGGGCTCTGAAGTGGATCACCGACAAGGAGTCGACGTTTGCCCAGCGCCTAGTT 41559
Query 25888 GCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCT- 25946
|||||||||||||| ||||||||||||||| || | || || |||||||||||||
Sbjct 41558 GCCTTTGCTGCTGTCGAGGGCATCTTTTTCTCAGGCGCCTTCGCCTCCATCTTCTGGCTG 41499
Query 25947 --CAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGA 26003
||||| | || | |||||| || ||| ||| || |||||||| || | ||
Sbjct 41498 CGCAAGC----GTGGTCTCATGCCTGGTCTGACCTTCTCAAACGAGCTTATTTCTCGTGA 41443
Query 26004 CGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACC 26063
||||| || |||| || ||||| |||||||| | | || || || | || ||
Sbjct 41442 TGAGGGCCTGCACACCGACTTTGCTTGCCTGCTGTTCTCG---CATCTGAACAAC-CGCC 41387
Query 26064 TTCTCAAGAGACC--GTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTT 26121
|||| |||| || | | ||||||| || || || | |||||||||||||||
Sbjct 41386 CCAGCAAG-GACCTTGTGCAAAAGATCATCACTGATGCCGTCGTGATCGAGAAGGAGTTC 41328
Query 26122 CNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGA-CTCATGAGCCAATA 26180
| | || |||||| | || || |||| || ||
Sbjct 41327 CTGACCGAGGCTCTGCCCTGCGGTCTGCTAGGAATGAAC-GCTGATCTGATGAAGCAGTA 41269
Query 26181 CATTGAGTATGTGGCCGACCATCTGC-TGTGCCAGCTGGGACTCGCCAGACTCTACAGTA 26239
|||||||| ||| || |||| |||| ||| | || || || | | ||| ||
Sbjct 41268 CATTGAGTTTGTTGCTGACCGCCTGCTTGTTGC-TCTAGGCAACGAGAAGGTGTACCGTG 41210
Query 26240 CGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTG 26299
| | ||||| |||||||| ||||| ||||| ||| | | || ||||| |||||||| |
Sbjct 41209 CCACAAACCCCTTCGACTTCATGGAGAACATCTCGCTCGGCGGCAAGACTAACTTCTTCG 41150
Query 26300 AAAAGAGGGTCGGCGACTATCA 26321
| ||| | ||||||||||| ||
Sbjct 41149 AGAAGCGTGTCGGCGACTACCA 41128
>seq598
Length=260485
Score = 163 bits (180), Expect = 5e-35
Identities = 814/1276 (64%), Gaps = 43/1276 (3%)
Strand=Plus/Minus
Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGG 221475
|| || || |||||||||||||| ||||| ||| ||||||||| || | || || ||
Sbjct 23626 GTTAGTGCGGCGTGGTAGATGGTTTCAAAAATCTGCTTGTTGAG-CTGGCGTGCTTCAGG 23568
Query 221476 AGAAGTGAAGGGCATACGCAGCATCT--GAAAGACGTCGGCCAGTCCCTGTACTCCGATA 221533
|| || ||||| || || | | ||||| |||| ||||| |||||||| |||| |
Sbjct 23567 GGATTCAAAAGGCATGCGGAG-AGCAAGGAAAG-CGTCAGCCAGGCCCTGTACACCGACA 23510
Query 221534 CCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACG 221593
|| ||||| | ||| | | ||||| | ||||| | || || || || ||
Sbjct 23509 CCAATGGGACGGTGGCGCATGTTGCTGTTGTGAGCTTCCTGGACAGGGTAGTGATTCACA 23450
Query 221594 TCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGA 221653
||||| | ||| ||||| || | |||| || ||| ||||| |
Sbjct 23449 TCGATGATGCGGTTTAGGTTGCGAACAACAACTTGGGTGACTTCGTGTAGCTTTT----- 23395
Query 221654 TTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTG 221713
| || | |||| || || || | ||||| || | ||||| |
Sbjct 23394 -TAAAGTCATACTCACCCTTGTTGTAG------TCCACGAAGGAAGGAAGGGCTAGAGAT 23342
Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773
|| ||||| ||||| || ||||| || | |||| || ||||| || || |||
Sbjct 23341 GCTAGGTTGCACACAGCGACCTCATCAGGGGCACAGTACTCGATAATCTCAGTGCACAGG 23282
Query 221774 TTGCTGCACTTG--ATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG-TCC 221830
|| | ||| ||||| || || | || ||||| |||||| ||| ||| | ||
Sbjct 23281 TTC--GAACTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTG-CAGTGGTCT 23225
Query 221831 TTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGT 221890
|||||||||||||| || ||||||||| ||||||| ||||||| | ||| |||
Sbjct 23224 TTGTAGAGCATAAAAGGGTTGCCAGTCTCAGTCTGAGCCTCCAGAATGGCATACCACAGT 23165
Query 221891 TCTCTGGCGCTCACCGTCCTCTTGACTGC-ACCCTCGGTCTTTTCATACCCGGTATAGAG 221949
| ||||| || | || ||| || |||||| ||| || ||| ||| ||
Sbjct 23164 T-TCTGGGCCTTGACAACCATGCGACCGCGACCCTC---CTTCTCGTACTTTTCATACAG 23109
Query 221950 CATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAG 222009
||||||| ||| || || || ||| ||| || || ||| ||||| ||
Sbjct 23108 AGCCTCAAACTCTTCGCCATAGCAATCCGCCAAGCCGGGGCATTCATTGGGGCACATGAG 23049
Query 222010 ACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTG 222069
| |||||| || || | | || | || |||||| | ||| ||||||||| |||
Sbjct 23048 AGTCCAGTCCTCATTCTTCTCAACACGCTTCATGAACAAGTCGCAGATCCACAGGGCCAA 22989
Query 222070 AAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTC 222129
|| || || | | || || ||| |||| ||| || | | || | |||||
Sbjct 22988 GAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAAGTCGAGGAACTC 22929
Query 222130 AAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCC 222189
|| | ||||| ||||| ||||| ||||| | ||| | || || ||||||||||| ||
Sbjct 22928 GAAGACATCAGCATGCCATGGCTCGAGATAAATGGCAAAGGCTCCAGGTCGCTTGTTTCC 22869
Query 222190 ACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGT 222248
|||||| | || ||| | | | |||||| | || || | || || | ||||
Sbjct 22868 ACCCTGGT-CAACATAACGGGCGGTGTTGTTGAAAACACGTAGCATGGGAACGATGCCGT 22810
Query 222249 TGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACA 222308
| || |||||| ||||| |||||| | || ||| | | ||| || |||
Sbjct 22809 TCGAAGTACCGTTAGTGCCAGCAATGTAAGAGCCAGTGGCAC---GAATAC-GGTGAACA 22754
Query 222309 T----GCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATG 222364
| ||||||||||| || || || |||||||| || ||||||| || ||
Sbjct 22753 TTGAGACCGATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAA 22694
Query 222365 ATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTG 222424
|||||||| || ||| ||||| | || | || ||||| || |||| ||||| | |
Sbjct 22693 ATGCCCTCGATGCTGTCATCCTTCATGTCGACTAGGAAACATGAAGACAACTGAGCCTGG 22634
Query 222425 GTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGA 222484
| | || ||| ||||| ||||| || ||||| || ||| | |||||||| ||
Sbjct 22633 GGAGTACCGGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAGACATAAGG 22574
Query 222485 TCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATG 222544
| ||| || || | || | ||| ||||| || ||| || || | |||
Sbjct 22573 TTGTAGGTTTCAAGCACACGATCGACTTTGTCACCCCAAATACCCACAGCAACACGCATT 22514
Query 222545 TACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTACGATTTTT 222602
||||| |||||| | ||| ||| || | || | ||| |||||||| |
Sbjct 22513 ATCATGTGCTGGGGACGCTCAACAATCTTACCATCAAGTT--TGAGTAGGTACGAACGCT 22456
Query 222603 CCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGT 222662
| || ||||| || |||||||| | | || ||||| | | ||| || | ||| | ||
Sbjct 22455 CGAGCGTCTTAAAGCCAAAGTACTGGTAGTTGAAGTCACGGTCGTACACAATGGCAGAGT 22396
Query 222663 CCAGCTCCGACTTGTG 222678
||||||| ||||||
Sbjct 22395 CCAGCTCATCCTTGTG 22380
Score = 95.1 bits (104), Expect = 2e-14
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175
||| || || ||||| || || | || || | | |||||| | ||| || ||| | ||
Sbjct 23918 GTTGACGACCTGGAACTCGCCAGCAAGAACGCGGCGCTGGTAAATGTTGGATGTGTAGGG 23859
Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235
||||| || ||| ||||||||||| ||||| | ||||||||| || ||||||||||| ||
Sbjct 23858 TTCGAAGCACTCATTGTTGCCCAGAATCTGCGACGTGCTGGCTGTAGGCATGGGTGCAAC 23799
Query 221236 CAGCAGACTGTTGCG 221250
|| ||| |||||
Sbjct 23798 TAGAAGAGAATTGCG 23784
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928833665472960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |