Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016- 01-13] 959 sequences; 30,717,923 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq209 221 2e-52 seq598 163 5e-35 >seq209 Length=70751 Score = 221 bits (244), Expect = 2e-52 Identities = 573/862 (66%), Gaps = 34/862 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| |||||||||||||||| | ||| |||||| || || |||||||||||| Sbjct 41972 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACTGCTGAGGAGATTGATCTG 41913 Query 25537 GCCAAGGACATGGACGGCTGGTACGC---TCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 | ||||| | ||| |||| || ||| ||||||||||||| | || || Sbjct 41912 TCTAAGGATCTCCACGACTGGAACAACCGTCTGAACAAAGACGAGCAGTACTTCATCTCC 41853 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 || | | || |||||||| ||||||||||| || || ||||| ||||| ||| | Sbjct 41852 CACATTCTTGCCTTCTTTGCTGCCTCTGATGGCATCGTCAACGAAAATCTCGTTGAGCGC 41793 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 ||| | | || |||||| | |||||| || ||||| ||||||||||| || Sbjct 41792 TTCTCAGGCGAGGTGCAGATCCCCGAGGCCCGCTGCTTCTATGGTTTCCAGATCATGATG 41733 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGA--CG 25768 ||||| | |||||||| || | ||| ||||| || ||||| | || | Sbjct 41732 GAAAACATCCACTCTGAAACCTACTC---GCTGCTGATTGACACCTACATCAAGGAGCCC 41676 Query 25769 TCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCAC-ATACCCAGCATCAAGAGGAAG 25827 |||| | | || ||||| |||||| || ||| || ||| ||||| | ||| Sbjct 41675 TCGCAACGC-ACATAC-CTGTTCAATGCCATTGA-CACTATTCCCTGCATCCGCCGCAAG 41619 Query 25828 GCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTA 25887 || ||||| |||||||||||| | | || | ||||||| | |||| || || Sbjct 41618 GCCGACTGGGCTCTGAAGTGGATCACCGACAAGGAGTCGACGTTTGCCCAGCGCCTAGTT 41559 Query 25888 GCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCT- 25946 |||||||||||||| ||||||||||||||| || | || || ||||||||||||| Sbjct 41558 GCCTTTGCTGCTGTCGAGGGCATCTTTTTCTCAGGCGCCTTCGCCTCCATCTTCTGGCTG 41499 Query 25947 --CAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGA 26003 ||||| | || | |||||| || ||| ||| || |||||||| || | || Sbjct 41498 CGCAAGC----GTGGTCTCATGCCTGGTCTGACCTTCTCAAACGAGCTTATTTCTCGTGA 41443 Query 26004 CGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACC 26063 ||||| || |||| || ||||| |||||||| | | || || || | || || Sbjct 41442 TGAGGGCCTGCACACCGACTTTGCTTGCCTGCTGTTCTCG---CATCTGAACAAC-CGCC 41387 Query 26064 TTCTCAAGAGACC--GTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTT 26121 |||| |||| || | | ||||||| || || || | ||||||||||||||| Sbjct 41386 CCAGCAAG-GACCTTGTGCAAAAGATCATCACTGATGCCGTCGTGATCGAGAAGGAGTTC 41328 Query 26122 CNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGA-CTCATGAGCCAATA 26180 | | || |||||| | || || |||| || || Sbjct 41327 CTGACCGAGGCTCTGCCCTGCGGTCTGCTAGGAATGAAC-GCTGATCTGATGAAGCAGTA 41269 Query 26181 CATTGAGTATGTGGCCGACCATCTGC-TGTGCCAGCTGGGACTCGCCAGACTCTACAGTA 26239 |||||||| ||| || |||| |||| ||| | || || || | | ||| || Sbjct 41268 CATTGAGTTTGTTGCTGACCGCCTGCTTGTTGC-TCTAGGCAACGAGAAGGTGTACCGTG 41210 Query 26240 CGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTG 26299 | | ||||| |||||||| ||||| ||||| ||| | | || ||||| |||||||| | Sbjct 41209 CCACAAACCCCTTCGACTTCATGGAGAACATCTCGCTCGGCGGCAAGACTAACTTCTTCG 41150 Query 26300 AAAAGAGGGTCGGCGACTATCA 26321 | ||| | ||||||||||| || Sbjct 41149 AGAAGCGTGTCGGCGACTACCA 41128 >seq598 Length=260485 Score = 163 bits (180), Expect = 5e-35 Identities = 814/1276 (64%), Gaps = 43/1276 (3%) Strand=Plus/Minus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGG 221475 || || || |||||||||||||| ||||| ||| ||||||||| || | || || || Sbjct 23626 GTTAGTGCGGCGTGGTAGATGGTTTCAAAAATCTGCTTGTTGAG-CTGGCGTGCTTCAGG 23568 Query 221476 AGAAGTGAAGGGCATACGCAGCATCT--GAAAGACGTCGGCCAGTCCCTGTACTCCGATA 221533 || || ||||| || || | | ||||| |||| ||||| |||||||| |||| | Sbjct 23567 GGATTCAAAAGGCATGCGGAG-AGCAAGGAAAG-CGTCAGCCAGGCCCTGTACACCGACA 23510 Query 221534 CCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACG 221593 || ||||| | ||| | | ||||| | ||||| | || || || || || Sbjct 23509 CCAATGGGACGGTGGCGCATGTTGCTGTTGTGAGCTTCCTGGACAGGGTAGTGATTCACA 23450 Query 221594 TCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGA 221653 ||||| | ||| ||||| || | |||| || ||| ||||| | Sbjct 23449 TCGATGATGCGGTTTAGGTTGCGAACAACAACTTGGGTGACTTCGTGTAGCTTTT----- 23395 Query 221654 TTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTG 221713 | || | |||| || || || | ||||| || | ||||| | Sbjct 23394 -TAAAGTCATACTCACCCTTGTTGTAG------TCCACGAAGGAAGGAAGGGCTAGAGAT 23342 Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 || ||||| ||||| || ||||| || | |||| || ||||| || || ||| Sbjct 23341 GCTAGGTTGCACACAGCGACCTCATCAGGGGCACAGTACTCGATAATCTCAGTGCACAGG 23282 Query 221774 TTGCTGCACTTG--ATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG-TCC 221830 || | ||| ||||| || || | || ||||| |||||| ||| ||| | || Sbjct 23281 TTC--GAACTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTG-CAGTGGTCT 23225 Query 221831 TTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGT 221890 |||||||||||||| || ||||||||| ||||||| ||||||| | ||| ||| Sbjct 23224 TTGTAGAGCATAAAAGGGTTGCCAGTCTCAGTCTGAGCCTCCAGAATGGCATACCACAGT 23165 Query 221891 TCTCTGGCGCTCACCGTCCTCTTGACTGC-ACCCTCGGTCTTTTCATACCCGGTATAGAG 221949 | ||||| || | || ||| || |||||| ||| || ||| ||| || Sbjct 23164 T-TCTGGGCCTTGACAACCATGCGACCGCGACCCTC---CTTCTCGTACTTTTCATACAG 23109 Query 221950 CATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAG 222009 ||||||| ||| || || || ||| ||| || || ||| ||||| || Sbjct 23108 AGCCTCAAACTCTTCGCCATAGCAATCCGCCAAGCCGGGGCATTCATTGGGGCACATGAG 23049 Query 222010 ACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTG 222069 | |||||| || || | | || | || |||||| | ||| ||||||||| ||| Sbjct 23048 AGTCCAGTCCTCATTCTTCTCAACACGCTTCATGAACAAGTCGCAGATCCACAGGGCCAA 22989 Query 222070 AAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTC 222129 || || || | | || || ||| |||| ||| || | | || | ||||| Sbjct 22988 GAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAAGTCGAGGAACTC 22929 Query 222130 AAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCC 222189 || | ||||| ||||| ||||| ||||| | ||| | || || ||||||||||| || Sbjct 22928 GAAGACATCAGCATGCCATGGCTCGAGATAAATGGCAAAGGCTCCAGGTCGCTTGTTTCC 22869 Query 222190 ACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGT 222248 |||||| | || ||| | | | |||||| | || || | || || | |||| Sbjct 22868 ACCCTGGT-CAACATAACGGGCGGTGTTGTTGAAAACACGTAGCATGGGAACGATGCCGT 22810 Query 222249 TGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACA 222308 | || |||||| ||||| |||||| | || ||| | | ||| || ||| Sbjct 22809 TCGAAGTACCGTTAGTGCCAGCAATGTAAGAGCCAGTGGCAC---GAATAC-GGTGAACA 22754 Query 222309 T----GCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATG 222364 | ||||||||||| || || || |||||||| || ||||||| || || Sbjct 22753 TTGAGACCGATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAA 22694 Query 222365 ATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTG 222424 |||||||| || ||| ||||| | || | || ||||| || |||| ||||| | | Sbjct 22693 ATGCCCTCGATGCTGTCATCCTTCATGTCGACTAGGAAACATGAAGACAACTGAGCCTGG 22634 Query 222425 GTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGA 222484 | | || ||| ||||| ||||| || ||||| || ||| | |||||||| || Sbjct 22633 GGAGTACCGGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAGACATAAGG 22574 Query 222485 TCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATG 222544 | ||| || || | || | ||| ||||| || ||| || || | ||| Sbjct 22573 TTGTAGGTTTCAAGCACACGATCGACTTTGTCACCCCAAATACCCACAGCAACACGCATT 22514 Query 222545 TACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTACGATTTTT 222602 ||||| |||||| | ||| ||| || | || | ||| |||||||| | Sbjct 22513 ATCATGTGCTGGGGACGCTCAACAATCTTACCATCAAGTT--TGAGTAGGTACGAACGCT 22456 Query 222603 CCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGT 222662 | || ||||| || |||||||| | | || ||||| | | ||| || | ||| | || Sbjct 22455 CGAGCGTCTTAAAGCCAAAGTACTGGTAGTTGAAGTCACGGTCGTACACAATGGCAGAGT 22396 Query 222663 CCAGCTCCGACTTGTG 222678 ||||||| |||||| Sbjct 22395 CCAGCTCATCCTTGTG 22380 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| || || | || || | | |||||| | ||| || ||| | || Sbjct 23918 GTTGACGACCTGGAACTCGCCAGCAAGAACGCGGCGCTGGTAAATGTTGGATGTGTAGGG 23859 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 ||||| || ||| ||||||||||| ||||| | ||||||||| || ||||||||||| || Sbjct 23858 TTCGAAGCACTCATTGTTGCCCAGAATCTGCGACGTGCTGGCTGTAGGCATGGGTGCAAC 23799 Query 221236 CAGCAGACTGTTGCG 221250 || ||| ||||| Sbjct 23798 TAGAAGAGAATTGCG 23784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928833665472960