Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016- 01-13] 959 sequences; 30,717,923 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq598 145 9e-30 seq209 111 2e-19 seq710 84.2 3e-11 >seq598 Length=260485 Score = 145 bits (160), Expect = 9e-30 Identities = 1036/1647 (63%), Gaps = 47/1647 (3%) Strand=Plus/Plus Query 75305 TTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGT 75364 |||| ||||||| |||| || ||||| ||||| ||||| || | ||| |||| Sbjct 22593 TTCACTCACGCATCACCTACGCTCTTTAATGCCGGTACTCCCCAGGCTCAGTTGTCTTCA 22652 Query 75365 TGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAG 75424 || ||||| ||| || ||||| ||| ||| | || || || | || || | | Sbjct 22653 TGTTTCCTAGTCGACATGAAGGATGACAGCATCGAGGGCATTTACGATACCCTCAAGACT 22712 Query 75425 TGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCC 75484 ||||| || || ||| |||||| ||||| || | | | || | | | ||| Sbjct 22713 TGTGCCATGATTTCCAAGATGGCTGGTGGTATCGGTCTCAATGTTCACCGTATTCGTGCC 22772 Query 75485 AATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGC 75544 | | ||| ||| || || || ||| || | || || |||| ||||| || Sbjct 22773 ACTGGCTCTTACATTGCTGGCACTAACGGTACTTCGAACGGCATCGTTCCCATGCTACGT 22832 Query 75545 GTATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGTCGCAAG------GGGTCC 75598 || || ||| ||| || || ||||| | || ||| | |||| || || Sbjct 22833 GTTTTCAACAACACCGCCCGTTATGTTGACCA---GGGTGGAAACAAGCGACCTGGAGCC 22889 Query 75599 ATCGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTC 75658 | || | || | || ||||||||||| ||| || | |||||||| || ||||| Sbjct 22890 TTTGCCATTTATCTCGAGCCATGGCATGCTGATGTCTTCGAGTTCCTCGACTTACGCAAG 22949 Query 75659 AACCAAGGTGACGAAGAGGCTCGGTG-TAGAGATCTCTTTTCATCCCTGTGGATTCCAGA 75717 ||||| || | ||||| | || ||| | | || || || | |||||||||| || Sbjct 22950 AACCACGGAAAGGAAGAAG-TCCGTGCTCGTGACCTATTCTTGGCCCTGTGGATCTGCGA 23008 Query 75718 CCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGAC-AAGG 75776 | | ||||||||||| |||||| || || | ||| |||| | || || | || | Sbjct 23009 CTTGTTCATGAAGCGTGTTGAGAAGAATGAGGACTGGACTCTCATGTGCCCCAATGAATG 23068 Query 75777 CACCAGGTCTCTCCGAC-GCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAA 75835 | || | | | | || || ||| || |||||||| || || || |||||| || Sbjct 23069 CCCCGGCT-TGGCGGATTGCTATGGC-GAAGAGTTTGAGGCTCTGTATGAAAAGTACGAG 23126 Query 75836 GAGGAGGGTAGAG--CCAATGCGACTGTACCAGCCGCCGATGTT-TGGAAGGCTATTCTC 75892 |||||||| | | | ||| ||| | || | | || | ||| | || ||||| Sbjct 23127 AAGGAGGGTCGCGGTCGCATGGT--TGT-CAAGGCCCAGAAACTGTGGTATGCCATTCTG 23183 Query 75893 AAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAG 75952 | | ||||| |||||||| | || | |||||| ||||| || || ||| ||| Sbjct 23184 GAGGCTCAGACTGAGACTGGCAACCCTTTTATGCTCTACAAAGACCACTGCAACCGCAAG 23243 Query 75953 AGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAG 76012 || || || || ||| | || || || || || || || ||||| || ||| | ||| Sbjct 23244 AGCAATCAGAAAAATCTAGGTACCATTCGCAGTTCGAACCTGTGCACTGAGATTATCGAG 23303 Query 76013 TACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTAT 76072 ||| | |||||| ||||| ||||| | ||||| | |||||||| | Sbjct 23304 TACTGTGCCCCTGATGAGGTCGCTGTGTGCAACCTAGCATCTCTAGCCCTTCCTTCCTTC 23363 Query 76073 GTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTT 76132 || | | | | | | ||| | | |||| || || ||| |||| | ||||| Sbjct 23364 GTGGACTACAACAAGGGTGAGTATGACTTTAAAAAGCTACACGAAGTCACCCAAGTTGTT 23423 Query 76133 ACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAG 76192 || |||||||| |||| || ||| || || || || || | || Sbjct 23424 GTTCGCAACCTAAACCGCATCATCGATGTGAATCACTACCCTGTCCAGGAAGCTCACAAC 23483 Query 76193 TCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATT 76252 || ||||| ||| | || |||||| | ||||| || || || || || | || || Sbjct 23484 AGCAACATGCGCCACCGTCCCATTGGTGTCGGTGTACAGGGCCTGGCTGACGCTTTCCTT 23543 Query 76253 TTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAA 76312 |||| | ||||| || |||||| || | || | || |||||| Sbjct 23544 GCTCTCCGCATGCCTTTTGAATCCCCTGAAGCACGCCAGCTCAACAAGCAGATTTTTGAA 23603 Query 76313 ACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTAT 76372 ||||| || ||||| | || || ||| | || | | | ||| | || Sbjct 23604 ACCATCTACCACGCCGCACTAACTGCTTCAATGGAAATCGCCCAGACGGAGGGTACTTAC 23663 Query 76373 GAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGT 76432 || | |||||||||||| | |||||||| | | |||||||||||||||| | || Sbjct 23664 TCAACTTATGAGGGTTCTCCTGTCTCCCAAGGCATCTTGCAGTTTGATATGTGGG-ATGT 23722 Query 76433 GAAACCAAGCTCAAC--TACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTC 76490 || || || | | | | |||||| | ||| ||||| || ||| || | ||| Sbjct 23723 GACTCCTAG-TGACCTGTGGGACTGGACTTCTCTAAAGGAGAAGATTAAGCAGCATGGTG 23781 Query 76491 TTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTA 76550 | || || |||| | | ||||| ||||| |||||| ||| | || || |||| | Sbjct 23782 TACGCAATTCTCTTCTAGTTGCACCCATGCCTACAGCCAGCACGTCGCAGATTCTGGGCA 23841 Query 76551 ATAATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTG 76610 | ||||| ||||| ||||| |||||| | ||||| |||| | | | || || || | Sbjct 23842 ACAATGAGTGCTTCGAACCCTACACATCCAACATTTACCAGCGCCGCGTTCTTGCTGGCG 23901 Query 76611 AGTTTGTCATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGA--TTGGTCTCTGGTC 76668 |||| | |||||| ||| | |||||| || || ||||| | ||||| Sbjct 23902 AGTTCCAGGTCGTCAACCCCTGGCTCCTACGTGACCT--AGTCGATCTTGGTTTATGGTC 23959 Query 76669 CAAGGATATGAAGGATCTCATGGTGAAAGCGG---GTGGTTCCATTCAAAATATCTCAGA 76725 | |||||||| ||| || | | |||| ||| |||||||| || ||||| Sbjct 23960 TGACAATATGAAGAATCGCA---TTATTGCGGACAATGGCTCCATTCAGAACATCTCTAG 24016 Query 76726 TATCCCAGATGATATCAAGAATCTCTACCGCACAGTGTGGGAAAT---CAAGATGAAAGA 76782 || || | |||||| || ||| ||| || || ||||| || | || | || Sbjct 24017 CATTCCTGCTGATATTAAAGCTCTGTACAAGACCGTTTGGGAGATTTCCCAGCGTACAGT 24076 Query 76783 TGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCT 76842 || | | ||||| || ||||||||| |||||||| ||| || ||| | | Sbjct 24077 TG---TGCAAATGGCTGCTGATCGTGGTGCTTTCATTGACCAA--TCGCAGTCTCTAAAC 24131 Query 76843 ATT--CATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCA-TATGTACGCGTGGAA 76899 ||| |||| || ||| || ||| |||| || | ||||| | || || ||||| Sbjct 24132 ATTCACATGAAAGATCCCACCATGGGCAAGATCACCAGCATGCACTTTGCTGGC-TGGAA 24190 Query 76900 ACAGGGGCTCAAAACCGGAATGTACTA 76926 || || ||||| || || |||||||| Sbjct 24191 ACTAGGTCTCAAGACGGGCATGTACTA 24217 >seq209 Length=70751 Score = 111 bits (122), Expect = 2e-19 Identities = 340/520 (65%), Gaps = 7/520 (1%) Strand=Plus/Minus Query 64714 TGGACTGCGGAAGAAGTTGATTTGTCCAAAGATCTTGACGACTGGAAGACCC---TGAAT 64770 |||||||| || || ||||| |||| || ||||| |||||||||| | || |||| Sbjct 41936 TGGACTGCTGAGGAGATTGATCTGTCTAAGGATCTCCACGACTGGAACAACCGTCTGAAC 41877 Query 64771 GAAAATGAAAAGAAATTCATAAAGTACATCCTGGCATTCTTTGCTGGGTCCGATGGAATT 64830 || | || || | ||||| |||| || || |||||||||| || ||||| || Sbjct 41876 AAAGACGAGCAGTACTTCATCTCCCACATTCTTGCCTTCTTTGCTGCCTCTGATGGCATC 41817 Query 64831 GTTTTTGAGAATATCAATAACAATTTTGCGGATGAAGTGCAGATAAGCGAAGCGCGCTCA 64890 || || ||| || | | || | | || |||||||| ||| || |||| Sbjct 41816 GTCAACGAAAATCTCGTTGAGCGCTTCTCAGGCGAGGTGCAGATCCCCGAGGCCCGCTGC 41757 Query 64891 TTCTACGCATATCAATGCCATAATG-AAATGGTTCATGGCGAAACATATTCAAAATTGAT 64949 ||||| | | || | ||| ||| ||| | || ||||| || || |||| Sbjct 41756 TTCTATGGTT-TCCAGATCATGATGGAAAACATCCACTCTGAAACCTACTCGCTGCTGAT 41698 Query 64950 TGACAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAACTGT 65009 ||||| ||||| ||||| || || | | | || | ||||| | ||| | Sbjct 41697 TGACACCTACATCAAGGAGCCCTCGCAACGCACATACCTGTTCAATGCCATTGACACTAT 41638 Query 65010 ACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC-ACAAAGTCTCGCT 65068 || || || ||||| | ||||| |||| ||| | | |||| | ||| Sbjct 41637 TCCCTGCATCCGCCGCAAGGCCGACTGGGCTCTGAAGTGGATCACCGACAAGGAGTCGA- 41579 Query 65069 CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCAT 65128 | || ||| ||||||| |||| ||||| ||| ||||| ||||| ||||| || | | Sbjct 41578 CGTTTGCCCAGCGCCTAGTTGCCTTTGCTGCTGTCGAGGGCATCTTTTTCTCAGGCGCCT 41519 Query 65129 TCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATG 65188 || | | || | ||| || ||||| ||||||||||| || || ||||||||| | Sbjct 41518 TCGCCTCCATCTTCTGGCTGCGCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCAAACG 41459 Query 65189 AACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 | |||||||| || |||||||| || ||| || ||||| Sbjct 41458 AGCTTATTTCTCGTGATGAGGGCCTGCACACCGACTTTGC 41419 >seq710 Length=50993 Score = 84.2 bits (92), Expect = 3e-11 Identities = 186/274 (68%), Gaps = 10/274 (4%) Strand=Plus/Minus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGT---GGTGCCAAGATC 175287 ||| ||||| | || |||||| | ||||| | | |||| || |||||||||||| Sbjct 35769 GAGTTTGTGCAGTTCCTCAAGAAGCCCGAAA---AGTTTGTGCGTCTGGGTGCCAAGATC 35713 Query 175288 CCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCC 175347 || || ||||| | || |||| || || ||||| ||||| || || ||| ||| Sbjct 35712 CCGCGTGGCGCTATCCTATCGGGCCCTCCGGGAACGGGCAAGACGCTGCTAGCCAAGGCC 35653 Query 175348 ATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAA--ACTTTGTGGAGA 175405 | || || || ||| || || ||| || || | || || || | ||||| |||| Sbjct 35652 ACGGCTGGCGAGTCAGGCGTTCCGTTCTTC-AGCG-TCAGCGGCTCCGAGTTTGTCGAGA 35595 Query 175406 TGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATC 175465 ||||||| || |||||| | | || || ||||| |||| | || ||| | || Sbjct 35594 TGTTTGTCGGCGTGGGTCCGTCGCGTGTGCGTGATCTTTTTGCTACGGCGCGCAAGAACG 35535 Query 175466 AACCATGTATTGTCTTCATTGATGAGATTGATGC 175499 ||||| || | || ||||| ||||||||||| Sbjct 35534 CGCCATGCATCATTTTTATTGACGAGATTGATGC 35501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596562448621920