Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016- 01-13] 959 sequences; 30,717,923 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq350 122 3e-22 seq268 89.7 2e-12 seq273 86.0 2e-11 >seq350 Length=444183 Score = 122 bits (134), Expect = 3e-22 Identities = 196/277 (71%), Gaps = 10/277 (4%) Strand=Plus/Minus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631 ||||||| | ||||| || |||||| || || || || ||| | ||| || ||||| Sbjct 131803 TCTTCCAAAGCCTTGACTAGACGACGTTGGATGTAGCCGGTTTCGGCTGTCTTCACAGCA 131744 Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTA-- 302689 || ||||| ||||| |||||||| |||| |||||||| || | || || ||| Sbjct 131743 GTGTCAATGAGACCTTCACGACCAGCCATGGCATGGAAAAAGAATTCGCTAGGA-GTAAG 131685 Query 302690 GCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGG 302749 ||| | ||| | |||| ||||||| || ||||| || || || |||| ||| ||||| Sbjct 131684 GCCACGCAAGTA-GGAGTTCTCAACAAATCCACGAGCTTCAGGGGAATAATCGTCCTTGG 131626 Query 302750 TAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCT 302809 | || || ||||| |||| || | | || | || ||||||||||| ||||| | | Sbjct 131625 TGAAATGAGGCAGAGTCCGGTATTTGAACCCAAAAGGAATACGCTTTCCTTCAACAATTT 131566 Query 302810 GCTGTC---CCAGGCACGAAATCATCTGCGAAATATT 302843 |||| | |||| || ||||||||||||| || Sbjct 131565 GCTGACCGACCAGAGCCG---TCATCTGCGAAATGTT 131532 >seq268 Length=395830 Score = 89.7 bits (98), Expect = 2e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || |||||||| | | ||| | || || | | | ||||| || | ||| | | ||| Sbjct 376170 ATCAGACCACAAATCTCACAAATGTGCACTCGGAAGGCATCCGAAACCTCAAACAACCGC 376229 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| ||| | |||||| || | ||||||||||||||| |||||||| |||||| Sbjct 376230 TCCTTCAAGAACGCTGCTGCACCATGGGCAATCATACAATCACGTTCCATTTCTCCGAAA 376289 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGT 251570 || | ||||||||| ||||| | ||| || | ||||| || || Sbjct 376290 CGCAAACCACCATCACGAGCACGACCTTCAACTGGCTGTCGCGT 376333 >seq273 Length=498088 Score = 86.0 bits (94), Expect = 2e-11 Identities = 117/163 (72%), Gaps = 8/163 (5%) Strand=Plus/Plus Query 251482 GATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCG 251541 || || |||| | ||||| ||||||||||||||| ||||| | ||| |||||||| ||| Sbjct 187109 GAGGCTCCGTAGGCAATCAAACAATCACGCTCCATCTCACCCAGACGCAGACCACCCTCG 187168 Query 251542 CGAGCCCTACCCTCGGCAGGCTGACG----AGTGAGATTAACCATAGGACCGATGGAGCG 251597 || | |||||||| | |||||||| |||||| | | ||||| | || || Sbjct 187169 CGCGATCTACCCTCAGTGGGCTGACGGGTCAGTGAGGCTCGC----GGACCCGTTGATCG 187224 Query 251598 GCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAG 251640 || ||| || | ||||| |||||||||||||| ||| Sbjct 187225 CGAGTGCATCTTGTCCTGCACCATGTGCTTGAGACGCTGATAG 187267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471799515501183