Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016-
01-13] 959 sequences; 30,717,923 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq350 147 3e-29
seq328 136 5e-26
seq209 129 7e-24
seq598 107 2e-17
seq283 95.1 1e-13
>seq350
Length=444183
Score = 147 bits (162), Expect = 3e-29
Identities = 269/393 (68%), Gaps = 6/393 (2%)
Strand=Plus/Minus
Query 18096 CTTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCAT 18155
|||||| ||||||||||| || ||||||||||||||| ||| | |||||| || |
Sbjct 362586 CTTTGGTGAGTCGCACGGCAAGGCCGTCGGCTGCATCATTGACAACCCGCCGCCTGGCCT 362527
Query 18156 GCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGC 18215
| || |||| || ||||||||||||||| || ||| || |||| |||||| | |
Sbjct 362526 TTCCCTAACCGAAGCTGACATCCAGCCTCAGCTGACTCGCCGGAGACCCGGCCAGAGTTC 362467
Query 18216 ACTTTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGG 18275
|| | || |||||||| || || || || | || | ||||||| ||| |||
Sbjct 362466 GATTACAACACCGCGCAATGAAAAGGACCGTGTGACGATTCTGTCGGGCTGCGAGTTCGG 362407
Query 18276 CCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGA 18335
|| ||| || ||| | ||| | | || || ||| |||||||||||| ||
Sbjct 362406 CCGCACTCTAGGCACTCCCATTGCTCTGAGCGTTAACAATGAAGACCAGCGGCCCCGTGA 362347
Query 18336 CT-----ATTCCGAC-ATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACAT 18389
| | | ||| ||| |||| || |||||||| || || || | ||| ||| |
Sbjct 362346 TTACGGAAACCAGACTATGGACAAGTACCCCCGGCCCTCGCATGCTGATTTCACGTACCT 362287
Query 18390 GGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCT 18449
|| || ||| |||||||||| ||||| || || |||||| ||| || ||||| |
Sbjct 362286 GGAAAAATACAGCATCAAGGCATCGTCAGGAGGCGGCCGGAGTAGTGCACGTGAGACTAT 362227
Query 18450 CATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482
|||||| || ||||| ||||| || || ||
Sbjct 362226 TGCGCGCGTGGCTGCCGGTGCGGTGGCTGAAAA 362194
Score = 87.8 bits (96), Expect = 2e-11
Identities = 108/148 (73%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 19052 CATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCCGTG 19111
|| ||| ||||| || || ||||| ||||||||||| | || || || ||||||
Sbjct 361953 CACCGGTGGCACTGTCACTTGCGTTATCCGCAACGTGCCCACGGGTCTTGGTGAGCCGGC 361894
Query 19112 CTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGG 19171
|||||| ||| | |||||| ||| || || || |||||| ||||| ||| |||||
Sbjct 361893 CTTTGATAAGCTGGAGGCCAAGCTGGCTCATGCTATGCTGAGCATCCCCGCCTGCAAGGC 361834
Query 19172 ATTCGAGATTGGCAGCGGGTTTGCGGGT 19199
|| ||||||||| || ||||| |||
Sbjct 361833 CTTTGAGATTGGCTCGGGATTTGCCGGT 361806
>seq328
Length=127297
Score = 136 bits (150), Expect = 5e-26
Identities = 95/108 (88%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
||| ||||||| || || |||||||| ||||||||| |||| |||||| |||| ||||||
Sbjct 82767 GCCTCCAACTATCTTGATATCAAGCCCCTGCTCGATGTTGGCTGCAAGACTGTCGCCAAC 82708
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATC 1592293
||||||||||||||||| ||||| || |||||||||||||| ||||||
Sbjct 82707 ATGATCAAGGGCAAGTCTCCCGAAGAAATCCGCAAGACCTTCAACATC 82660
>seq209
Length=70751
Score = 129 bits (142), Expect = 7e-24
Identities = 186/258 (72%), Gaps = 11/258 (4%)
Strand=Plus/Plus
Query 869210 AAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCC 869269
|||| || || |||||||| || ||||| ||||| ||||||| | ||| |||
Sbjct 41467 AAGGTCAGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCGCCT 41526
Query 869270 GAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGG 869329
|||||||||||||||||||| || |||||| | | || |||| |||||| |||||
Sbjct 41527 GAGAAAAAGATGCCCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCAAA--CGTCGA-- 41582
Query 869330 CCCTCCTTGT---TGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACC 869386
|||||||| |||||||||||| |||||||||||||| | | | || |
Sbjct 41583 --CTCCTTGTCGGTGATCCACTTCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATA 41640
Query 869387 GTGTCGATGGCGCGAAAGAGGT-GGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGAT 869445
||||| ||||| || |||| || | || | | || ||||||| |||||||| ||
Sbjct 41641 GTGTCAATGGCATTGAACAGGTATGTGCGTTGC-GAGGGCTCCTTGATGTAGGTGTCAAT 41699
Query 869446 CAGGAGCGAATAGGTCTC 869463
||| ||||| ||||| ||
Sbjct 41700 CAGCAGCGAGTAGGTTTC 41717
Score = 116 bits (128), Expect = 5e-20
Identities = 172/244 (70%), Gaps = 0/244 (0%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| ||||| || ||| |||||| ||||| |||||||| ||||||||||
Sbjct 41122 GCCTTCTGGTAGTCGCCGACACGCTTCTCGAAGAAGTTAGTCTTGCCGCCGAGCGAGATG 41181
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||| | | ||| ||| ||| || || | |
Sbjct 41182 TTCTCCATGAAGTCGAAGGGGTTTGTGGCACGGTACACCTTCTCGTTGCCTAGAGCAACA 41241
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
||||||||||| || |||||||| |||||||| ||| || | |||||||| || |
Sbjct 41242 AGCAGGCGGTCAGCAACAAACTCAATGTACTGCTTCATCAGATCAGCGTTCATTCCTAGC 41301
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
|| | ||||| | |||| ||| ||||| ||||||||| ||||||| || ||||
Sbjct 41302 AGACCGCAGGGCAGAGCCTCGGTCAGGAACTCCTTCTCGATCACGACGGCATCAGTGATG 41361
Query 868931 ATCT 868934
||||
Sbjct 41362 ATCT 41365
>seq598
Length=260485
Score = 107 bits (118), Expect = 2e-17
Identities = 211/312 (68%), Gaps = 0/312 (0%)
Strand=Plus/Minus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
|||||| || || || || |||| ||| || || || |||||||| |||| |||||| ||
Sbjct 22865 CTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGTAGCATGGGAACGATGCCGTTCGA 22806
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
||||| ||||| || | ||| | ||| | ||| || | ||| | | ||
Sbjct 22805 AGTACCGTTAGTGCCAGCAATGTAAGAGCCAGTGGCACGAATACGGTGAACATTGAGACC 22746
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
||| || || ||| |||||| || | || || ||||| || ||||| ||||||||
Sbjct 22745 GATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAAATGCCCTC 22686
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
||| ||| |||||||||| || || || || || || || | || | || ||
Sbjct 22685 GATGCTGTCATCCTTCATGTCGACTAGGAAACATGAAGACAACTGAGCCTGGGGAGTACC 22626
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
||| || |||||||| || | || ||||| |||| | ||||| || ||||||
Sbjct 22625 GGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAGACATAAGGTTGTAGGT 22566
Query 1630365 GGCGAGCACGCG 1630376
| ||||| ||
Sbjct 22565 TTCAAGCACACG 22554
>seq283
Length=100002
Score = 95.1 bits (104), Expect = 1e-13
Identities = 135/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 1574067 GGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAG 1574126
|| || |||||| | || ||||||||||| || || | | | || || | ||||||||
Sbjct 48500 GGCCGACACAAGCTCATTATCCTCGACGAAGCTGATTCCATGACCTCAGGCGCCCAGCAA 48441
Query 1574127 GCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAAC 1574186
||||| || || ||||||| || ||||||| || ||||| || | || ||||||
Sbjct 48440 GCCCTCCGCAGAACTATGGAAATCTACTCCAACACTACACGCTTCGCGTTTGCATGCAAC 48381
Query 1574187 ACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCTTTGTGCGC 1574246
||| | | |||| ||| | ||||| || |||||||||||||||| || |||
Sbjct 48380 CAGTCCAACAAGATCATTGAGCCGCTCCAGTCCCGATGCGCCATTCTGCGCTATGGGCGG 48321
Query 1574247 CTGGGTGACG 1574256
|| |||||
Sbjct 48320 CTAACTGACG 48311
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107060499969003
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |