Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016- 01-13] 959 sequences; 30,717,923 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq350 147 3e-29 seq328 136 5e-26 seq209 129 7e-24 seq598 107 2e-17 seq283 95.1 1e-13 >seq350 Length=444183 Score = 147 bits (162), Expect = 3e-29 Identities = 269/393 (68%), Gaps = 6/393 (2%) Strand=Plus/Minus Query 18096 CTTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCAT 18155 |||||| ||||||||||| || ||||||||||||||| ||| | |||||| || | Sbjct 362586 CTTTGGTGAGTCGCACGGCAAGGCCGTCGGCTGCATCATTGACAACCCGCCGCCTGGCCT 362527 Query 18156 GCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGC 18215 | || |||| || ||||||||||||||| || ||| || |||| |||||| | | Sbjct 362526 TTCCCTAACCGAAGCTGACATCCAGCCTCAGCTGACTCGCCGGAGACCCGGCCAGAGTTC 362467 Query 18216 ACTTTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGG 18275 || | || |||||||| || || || || | || | ||||||| ||| ||| Sbjct 362466 GATTACAACACCGCGCAATGAAAAGGACCGTGTGACGATTCTGTCGGGCTGCGAGTTCGG 362407 Query 18276 CCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGA 18335 || ||| || ||| | ||| | | || || ||| |||||||||||| || Sbjct 362406 CCGCACTCTAGGCACTCCCATTGCTCTGAGCGTTAACAATGAAGACCAGCGGCCCCGTGA 362347 Query 18336 CT-----ATTCCGAC-ATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACAT 18389 | | | ||| ||| |||| || |||||||| || || || | ||| ||| | Sbjct 362346 TTACGGAAACCAGACTATGGACAAGTACCCCCGGCCCTCGCATGCTGATTTCACGTACCT 362287 Query 18390 GGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCT 18449 || || ||| |||||||||| ||||| || || |||||| ||| || ||||| | Sbjct 362286 GGAAAAATACAGCATCAAGGCATCGTCAGGAGGCGGCCGGAGTAGTGCACGTGAGACTAT 362227 Query 18450 CATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482 |||||| || ||||| ||||| || || || Sbjct 362226 TGCGCGCGTGGCTGCCGGTGCGGTGGCTGAAAA 362194 Score = 87.8 bits (96), Expect = 2e-11 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 19052 CATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCCGTG 19111 || ||| ||||| || || ||||| ||||||||||| | || || || |||||| Sbjct 361953 CACCGGTGGCACTGTCACTTGCGTTATCCGCAACGTGCCCACGGGTCTTGGTGAGCCGGC 361894 Query 19112 CTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGG 19171 |||||| ||| | |||||| ||| || || || |||||| ||||| ||| ||||| Sbjct 361893 CTTTGATAAGCTGGAGGCCAAGCTGGCTCATGCTATGCTGAGCATCCCCGCCTGCAAGGC 361834 Query 19172 ATTCGAGATTGGCAGCGGGTTTGCGGGT 19199 || ||||||||| || ||||| ||| Sbjct 361833 CTTTGAGATTGGCTCGGGATTTGCCGGT 361806 >seq328 Length=127297 Score = 136 bits (150), Expect = 5e-26 Identities = 95/108 (88%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||| ||||||| || || |||||||| ||||||||| |||| |||||| |||| |||||| Sbjct 82767 GCCTCCAACTATCTTGATATCAAGCCCCTGCTCGATGTTGGCTGCAAGACTGTCGCCAAC 82708 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATC 1592293 ||||||||||||||||| ||||| || |||||||||||||| |||||| Sbjct 82707 ATGATCAAGGGCAAGTCTCCCGAAGAAATCCGCAAGACCTTCAACATC 82660 >seq209 Length=70751 Score = 129 bits (142), Expect = 7e-24 Identities = 186/258 (72%), Gaps = 11/258 (4%) Strand=Plus/Plus Query 869210 AAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCC 869269 |||| || || |||||||| || ||||| ||||| ||||||| | ||| ||| Sbjct 41467 AAGGTCAGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCGCCT 41526 Query 869270 GAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGG 869329 |||||||||||||||||||| || |||||| | | || |||| |||||| ||||| Sbjct 41527 GAGAAAAAGATGCCCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCAAA--CGTCGA-- 41582 Query 869330 CCCTCCTTGT---TGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACC 869386 |||||||| |||||||||||| |||||||||||||| | | | || | Sbjct 41583 --CTCCTTGTCGGTGATCCACTTCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATA 41640 Query 869387 GTGTCGATGGCGCGAAAGAGGT-GGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGAT 869445 ||||| ||||| || |||| || | || | | || ||||||| |||||||| || Sbjct 41641 GTGTCAATGGCATTGAACAGGTATGTGCGTTGC-GAGGGCTCCTTGATGTAGGTGTCAAT 41699 Query 869446 CAGGAGCGAATAGGTCTC 869463 ||| ||||| ||||| || Sbjct 41700 CAGCAGCGAGTAGGTTTC 41717 Score = 116 bits (128), Expect = 5e-20 Identities = 172/244 (70%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||||| || ||| |||||| ||||| |||||||| |||||||||| Sbjct 41122 GCCTTCTGGTAGTCGCCGACACGCTTCTCGAAGAAGTTAGTCTTGCCGCCGAGCGAGATG 41181 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||| | | ||| ||| ||| || || | | Sbjct 41182 TTCTCCATGAAGTCGAAGGGGTTTGTGGCACGGTACACCTTCTCGTTGCCTAGAGCAACA 41241 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||||||||| || |||||||| |||||||| ||| || | |||||||| || | Sbjct 41242 AGCAGGCGGTCAGCAACAAACTCAATGTACTGCTTCATCAGATCAGCGTTCATTCCTAGC 41301 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || | ||||| | |||| ||| ||||| ||||||||| ||||||| || |||| Sbjct 41302 AGACCGCAGGGCAGAGCCTCGGTCAGGAACTCCTTCTCGATCACGACGGCATCAGTGATG 41361 Query 868931 ATCT 868934 |||| Sbjct 41362 ATCT 41365 >seq598 Length=260485 Score = 107 bits (118), Expect = 2e-17 Identities = 211/312 (68%), Gaps = 0/312 (0%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| || || || || |||| ||| || || || |||||||| |||| |||||| || Sbjct 22865 CTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGTAGCATGGGAACGATGCCGTTCGA 22806 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||| ||||| || | ||| | ||| | ||| || | ||| | | || Sbjct 22805 AGTACCGTTAGTGCCAGCAATGTAAGAGCCAGTGGCACGAATACGGTGAACATTGAGACC 22746 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||| || || ||| |||||| || | || || ||||| || ||||| |||||||| Sbjct 22745 GATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAAATGCCCTC 22686 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||| ||| |||||||||| || || || || || || || | || | || || Sbjct 22685 GATGCTGTCATCCTTCATGTCGACTAGGAAACATGAAGACAACTGAGCCTGGGGAGTACC 22626 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 ||| || |||||||| || | || ||||| |||| | ||||| || |||||| Sbjct 22625 GGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAGACATAAGGTTGTAGGT 22566 Query 1630365 GGCGAGCACGCG 1630376 | ||||| || Sbjct 22565 TTCAAGCACACG 22554 >seq283 Length=100002 Score = 95.1 bits (104), Expect = 1e-13 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 1574067 GGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAG 1574126 || || |||||| | || ||||||||||| || || | | | || || | |||||||| Sbjct 48500 GGCCGACACAAGCTCATTATCCTCGACGAAGCTGATTCCATGACCTCAGGCGCCCAGCAA 48441 Query 1574127 GCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAAC 1574186 ||||| || || ||||||| || ||||||| || ||||| || | || |||||| Sbjct 48440 GCCCTCCGCAGAACTATGGAAATCTACTCCAACACTACACGCTTCGCGTTTGCATGCAAC 48381 Query 1574187 ACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCTTTGTGCGC 1574246 ||| | | |||| ||| | ||||| || |||||||||||||||| || ||| Sbjct 48380 CAGTCCAACAAGATCATTGAGCCGCTCCAGTCCCGATGCGCCATTCTGCGCTATGGGCGG 48321 Query 1574247 CTGGGTGACG 1574256 || ||||| Sbjct 48320 CTAACTGACG 48311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107060499969003