Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016- 01-13] 959 sequences; 30,717,923 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq209 163 4e-34 seq328 123 4e-22 seq598 96.9 5e-14 >seq209 Length=70751 Score = 163 bits (180), Expect = 4e-34 Identities = 216/295 (73%), Gaps = 11/295 (4%) Strand=Plus/Plus Query 794377 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAA 794436 || || |||||||| || ||||| ||||| ||||||| ||| ||| |||||| Sbjct 41473 AGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCGCCTGAGAAA 41532 Query 794437 AAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCT 794496 |||||||||||||| || |||||| | || || |||| |||||| || | | ||| Sbjct 41533 AAGATGCCCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCAAACGT--CGA----CTCC 41586 Query 794497 TTGT---TGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCG 794553 |||| |||||||||||| ||||| || ||||| | | |||| | ||||| Sbjct 41587 TTGTCGGTGATCCACTTCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTCA 41646 Query 794554 ATGGCGCGAAAGAGGTG-GTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAG 794612 ||||| || |||| || | | ||| || ||||||| ||||||||| || || || Sbjct 41647 ATGGCATTGAACAGGTATGTGCGTTGCGAG-GGCTCCTTGATGTAGGTGTCAATCAGCAG 41705 Query 794613 CGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCAG 794667 ||||||||| || |||||||||||||| || ||||||||| ||||| |||||| Sbjct 41706 CGAGTAGGTTTCAGAGTGGATGTTTTCCATCATGATCTGGAAACCATAGAAGCAG 41760 Score = 127 bits (140), Expect = 3e-23 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 || ||||| || ||| |||||| ||||| |||||||| |||||||||| |||||| Sbjct 41131 TAGTCGCCGACACGCTTCTCGAAGAAGTTAGTCTTGCCGCCGAGCGAGATGTTCTCCATG 41190 Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGG 794027 | ||| ||||| | | |||| ||||||| || || | ||||||||||| Sbjct 41191 AAGTCGAAGGGGTTTGTGGCACGGTACACCTTCTCGTTGCCTAGAGCAACAAGCAGGCGG 41250 Query 794028 TCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACG 794087 || || || || ||||||||||| ||| || | |||||||| || | || | | Sbjct 41251 TCAGCAACAAACTCAATGTACTGCTTCATCAGATCAGCGTTCATTCCTAGCAGACCGCAG 41310 Query 794088 GGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCT 794142 ||||| | |||| | | ||||| ||||||||| ||||||| || ||||||||| Sbjct 41311 GGCAGAGCCTCGGTCAGGAACTCCTTCTCGATCACGACGGCATCAGTGATGATCT 41365 >seq328 Length=127297 Score = 123 bits (136), Expect = 4e-22 Identities = 92/108 (85%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||| ||||||| || || ||||||||||| |||||| | || |||||||| || |||||| Sbjct 82767 GCCTCCAACTATCTTGATATCAAGCCCCTGCTCGATGTTGGCTGCAAGACTGTCGCCAAC 82708 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATC 2035754 | |||||||||||||| ||||| || |||||||||||||| |||||| Sbjct 82707 ATGATCAAGGGCAAGTCTCCCGAAGAAATCCGCAAGACCTTCAACATC 82660 >seq598 Length=260485 Score = 96.9 bits (106), Expect = 5e-14 Identities = 176/258 (68%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||| ||||| || || |||| ||| || || || |||||||| || | |||||| || Sbjct 22865 CTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGTAGCATGGGAACGATGCCGTTCGA 22806 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||||| ||||| || | ||| | ||| | ||| || | ||| | | || Sbjct 22805 AGTACCGTTAGTGCCAGCAATGTAAGAGCCAGTGGCACGAATACGGTGAACATTGAGACC 22746 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||| || || ||| |||||| || | || || | || || || ||||| |||||||| Sbjct 22745 GATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAAATGCCCTC 22686 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||| ||| |||||||||| | || || || || || || | | | || || Sbjct 22685 GATGCTGTCATCCTTCATGTCGACTAGGAAACATGAAGACAACTGAGCCTGGGGAGTACC 22626 Query 2073780 GGCATTGAAGAGCGTGGG 2073797 |||||| |||||||| || Sbjct 22625 GGCATTAAAGAGCGTAGG 22608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916144386796001