Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016- 01-13] 959 sequences; 30,717,923 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq249 127 1e-24 seq330 116 2e-21 seq753 114 8e-21 >seq249 Length=99862 Score = 127 bits (140), Expect = 1e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||| ||||| || || ||||||||||| ||||| || ||| |||| |||| Sbjct 88371 CAGGACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCATC 88430 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||||||||||||||| || || |||||||| | || | ||||||||||| Sbjct 88431 CTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTC 88490 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || |||||| | || | || || |||||| || | ||| ||||| Sbjct 88491 CTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAGGACTCGACTTCGAGGGTAATGGT 88550 Query 34945 CTTTCCCGTGAGGGTCTTTACAA 34967 |||||| || |||||||| |||| Sbjct 88551 CTTTCCGGTAAGGGTCTTGACAA 88573 Score = 93.3 bits (102), Expect = 3e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||||||||| ||||| || ||| |||| |||| || || |||||||| ||||| Sbjct 88676 CTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAA 88735 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||| || || |||||||| | || | ||||||||||| Sbjct 88736 GATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTC 88774 >seq330 Length=314808 Score = 116 bits (128), Expect = 2e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||| ||||| | |||| ||||||||| ||||| ||||| || || |||| |||| Sbjct 237229 CAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATC 237170 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || || ||||||| || |||||||| | || | ||||||||||| Sbjct 237169 CTCAAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 237110 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || |||||| | |||| || | |||||| || | ||| ||||| Sbjct 237109 CTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAGGGTAATGGT 237050 Query 34945 CTTTCCCGTGAGGGTCTTTACAAA 34968 ||| ||||| |||||||| || || Sbjct 237049 CTTACCCGTCAGGGTCTTGACGAA 237026 >seq753 Length=27693 Score = 114 bits (126), Expect = 8e-21 Identities = 143/194 (74%), Gaps = 8/194 (4%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||||||||| ||||| || ||| | || |||| ||||| ||||| || ||||||| Sbjct 10741 CCTTCTGAATGTTGTAGTCAGACAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 10800 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 |||| || |||||||| | || | ||||||||||| | || || ||||| || Sbjct 10801 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGAC--AT- 10857 Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | ||||| || || ||| || || | ||| || ||||| ||||| |||||||| Sbjct 10858 -TGTCGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTG 10916 Query 34964 ACAAAGATCTGCAT 34977 || || |||||||| Sbjct 10917 ACGAAAATCTGCAT 10930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325688993363621