Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016- 01-13] 959 sequences; 30,717,923 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq209 223 5e-52 seq598 122 1e-21 seq283 86.0 9e-11 >seq209 Length=70751 Score = 223 bits (246), Expect = 5e-52 Identities = 365/512 (71%), Gaps = 22/512 (4%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||||||||||||||| ||||| || |||||| | || | Sbjct 41973 GATCTGGCAGATGTAC-AAGAAGGCCGAGGCCTCCTTCTGGACTGCTGAGGAGATTGATC 41915 Query 1455835 TCGGCGCCGACACGGTCCAC---TGGGTGT--CG-CTGAGCGACGACGAGCGCCATTTCA 1455888 | | | | | ||||| ||| || |||| | | ||||||| | |||| Sbjct 41914 T-GTCTAAGGATC--TCCACGACTGGAACAACCGTCTGAACAAAGACGAGCAGTACTTCA 41858 Query 1455889 TCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC 1455948 || ||| | || ||||| ||| || ||| ||||||||||| ||| || || | Sbjct 41857 TCTCCCACATTCTTGCCTTCTTT-GCTGCCTCTGATGGCATCGTCAACGAAAATCTCGTT 41799 Query 1455949 GGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 | ||||| ||||| || | || ||||| || | || || || ||||||||| Sbjct 41798 GAGCGCTTCTCAGGCGAGGTGCAGATCCCCGAGGCCCGCTGCTTCTATGGTTTCCAGATC 41739 Query 1456009 GCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGAC 1456068 || ||||||||||||||||||||||||||||| ||||| ||||||||| ||||||| Sbjct 41738 ATGATGGAAAACATCCACTCTGAAACCTACTCGCTGCTGATTGACACCTACATCAAGGAG 41679 Query 1456069 CCGGTCGAGAAGGAC-CACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAA 1456127 || ||| | | || |||| || ||||| ||||| | || | | | || Sbjct 41678 CC-CTCGCAACGCACATACCTGTTCAATGCCATTGACACTATTCCCTGCATCCGCCGCAA 41620 Query 1456128 GGCCGACTGGGCGATGAAGTGGATCA---ACAAGGAGGGCCTCGACACTTTGCCGAGCGG 1456184 |||||||||||| |||||||||||| |||||||| ||||| |||||| |||| Sbjct 41619 GGCCGACTGGGCTCTGAAGTGGATCACCGACAAGGAG----TCGAC-GTTTGCCCAGCGC 41565 Query 1456185 CTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTT 1456243 || || | |||||| || |||||||||||||||||||| ||| ||| | ||||||| Sbjct 41564 CTAGTTGCCTTTGCTGCTGTCGAGGGCATCTTTTTCTCAGGCGCCTTCGCCTCCATCTTC 41505 Query 1456244 TGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||| ||||| || |||||||| ||||| Sbjct 41504 TGGCTGCGCAAGCGTGGTCTCATGCCTGGTCT 41473 Score = 104 bits (114), Expect = 3e-16 Identities = 178/253 (70%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 1456521 AGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGG 1456580 |||||||| || ||||||| ||||||||| ||||| | | |||| | ||||| | Sbjct 41365 AGATCATCACTGATGCCGTCGTGATCGAGAAGGAGTTCCTGACCGAGGCTCTGCCCTGCG 41306 Query 1456581 CGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCG 1456640 || | || |||||||| || ||| ||||||||||| ||| || || ||||| Sbjct 41305 GTCTGCTAGGAATGAACGCTGAT-CTGATGAAGCAGTACATTGAGTTT-GTTGCTGACCG 41248 Query 1456641 CCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGA 1456700 |||||| | || || ||| | |||||| ||||| | | ||||| ||| | | Sbjct 41247 CCTGCTTGTTGCTCTAGGCAAC-GAGAAGGTGTACCGTGCCACAAACCCCTTCGACTTCA 41189 Query 1456701 TGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACG 1456759 ||||| |||||||||| |||||||| ||||| |||||| || || ||||| ||| Sbjct 41188 TGGAGAACATCTCGCTCGGCGGCAAGACTAACTTCTTCGAGAAGCGTGTCGGCGACTACC 41129 Query 1456760 CCAAGGCCGGCGT 1456772 ||||| || || Sbjct 41128 AGAAGGCTGGTGT 41116 >seq598 Length=260485 Score = 122 bits (134), Expect = 1e-21 Identities = 334/504 (66%), Gaps = 21/504 (4%) Strand=Plus/Plus Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741 |||||||| | || ||| ||||||| ||| ||| ||||| |||| ||||||| Sbjct 22380 CACAAGGATGAGCTGGACTCTGCCATTGTGTACGACCGTGACTTCAACTACCAGTACTTT 22439 Query 259742 GGTCTGGCGAC-CTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTGTCGTCGAGCG 259800 || | ||| || | || | || ||||| |||| | | || | || ||||| Sbjct 22440 GGCTTTAAGACGCTCGAGC-GTTCGTACCTACTCAAACTTGATGGTAAGATTGTTGAGCG 22498 Query 259801 GCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACAA 259860 |||||| | ||| | |||||||| || | || ||| |||| ||||| Sbjct 22499 TCCCCAGCACATGATAATGCGTGTTGCTGTGGGT-ATTTGGGGT-----------GACAA 22546 Query 259861 TGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTCA- 259918 | | || | ||||| | |||||| | ||||| |||| ||| ||||| ||| Sbjct 22547 AG---TCGATCGTGTGCTTGAAACCTACAACCTTATGTCT-AGCAAGTTCTTCAC-TCAC 22601 Query 259919 GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTG 259978 || | || ||||||||||||||||| || || | | ||| || || || || || Sbjct 22602 GCATCACCTACGCTCTTTAATGCCGGTACTCCCCAGGCTCAGTTGTCTTCATGTTTCCTA 22661 Query 259979 TTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTC 260038 | |||||||||| || ||||||||||| || || || |||||| || || | Sbjct 22662 GTCGACATGAAGGATGACAGCATCGAGGGCATTTACGATACCCTCAAGACTTGTGCCATG 22721 Query 260039 ATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCC 260098 || |||||| ||| || || |||||| | | ||| | || ||| | ||| | Sbjct 22722 ATTTCCAAGATGGCTGGTGGTATCGGTCTCAATGTTCACCGTATTCGTGCCACTGGCTCT 22781 Query 260099 TACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAAC 260158 ||| | || ||||| ||||| || |||||| | || |||||||| || ||||| ||| Sbjct 22782 TACATTGCTGGCACTAACGGTACTTCGAACGGCATCGTTCCCATGCTACGTGTTTTCAAC 22841 Query 260159 GACACGGCGCGCTACGTCGACCAG 260182 |||| || || || || |||||| Sbjct 22842 AACACCGCCCGTTATGTTGACCAG 22865 >seq283 Length=100002 Score = 86.0 bits (94), Expect = 9e-11 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 332856 CGTCAGTGAGGCGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCA 332915 ||||||| || ||| || ||||||| ||||| || ||| ||| || | ||| |||| | Sbjct 48311 CGTCAGTTAGCCGCCCATAGCGCAGAATGGCGCATCGGGACTGGAGCGGCTCAATGATCT 48370 Query 332916 TTGACGACGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCG 332975 | ||| |||||| || | || || || || || |||| | ||||||| || Sbjct 48371 TGTTGGACTGGTTGCATGCAAACGCGAAGCGTGTAGTGTTGGAGTAGATTTCCATAGTTC 48430 Query 332976 ACCGGAGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCT 333035 |||||||| || ||||| | | || | | | || || ||||||||||| |||| || Sbjct 48431 TGCGGAGGGCTTGCTGGGCGCCTGAGGTCATGGAATCAGCTTCGTCGAGGATAATGAGCT 48490 Query 333036 TGTGGCGCCC 333045 |||| || || Sbjct 48491 TGTGTCGGCC 48500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177718702687358