Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016- 01-13] 959 sequences; 30,717,923 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq598 205 1e-47 seq209 140 4e-28 >seq598 Length=260485 Score = 205 bits (226), Expect = 1e-47 Identities = 639/981 (65%), Gaps = 20/981 (2%) Strand=Plus/Minus Query 69268 AGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCA---TATTGTATT 69324 || |||| ||||||||| || || || || ||||||| || ||| || | || Sbjct 23353 AGGGCTAGAGATGCTAGGTTGCACACAGCGACCTCATCAGGG---GCACAGTACTCGATA 23297 Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384 ||||| || || || || || || || || ||||||| |||||| ||||| | Sbjct 23296 ATCTCAGTGCACAGGTTCGAACTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGG 23237 Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATA 69444 || ||| ||| ||||| || ||||| || | ||||| ||| |||||| || | ||| Sbjct 23236 TTGCAGTGGTCTTTGTAGAGCATAAAAGGGTTGCCAGTCTCAGTCTGAGCCTCCAGAATG 23177 Query 69445 GATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAAC---GCTTCTCTTTTTCATAT 69501 | | ||| | | || || | || | || || | ||| || || || Sbjct 23176 GCATACCACAGTTTCTGGGCCTTGACAAC---CATGCGACCGCGACCCTCCTTCTCGTAC 23120 Query 69502 TGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTT 69561 | | ||| || || || || || || | ||| |||| || || |||||||| Sbjct 23119 TTTTCATACAGAGCCTCAAACTCTTCGCCATAGCAATCCGCCAAGCCGGGGCATTCATTG 23060 Query 69562 GGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATC 69621 || ||||| | | ||| | |||| | || ||| || ||||| || | ||| ||| Sbjct 23059 GGGCACATGAGAGTCCAGTCCTCATTCTTCTCAACACGCTTCATGAACAAGTCGCAGATC 23000 Query 69622 CAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCC-TGTAttttttttAAG 69680 || || || | || || || | | | |||||| ||||| || | || |||| Sbjct 22999 CACAGGGCCAAGAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAAG 22940 Query 69681 ATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGG 69740 ||||| ||||| | | ||||| ||||||||| || ||||| || || | | |||| || Sbjct 22939 -TCGAGGAACTCGAAGACATCAGCATGCCATGGCTCGAGATAAATGGCAAAGGCTCCAGG 22881 Query 69741 TCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGG 69800 ||| || ||||| ||||| || | || | ||| ||||| || | || | ||||| || Sbjct 22880 TCGCTTGTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGTAGCATGGG 22821 Query 69801 AATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATT 69860 || || || || || |||| || || |||| ||| ||| || | || |||||| Sbjct 22820 AACGATGCCGTTCGAAGTACCGTTAGTGCCAGCAATGTAAGAGCCAGTGGCACGAATACG 22761 Query 69861 ACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGT 69920 || | ||||| || || || ||||| || || || | |||||| || | || Sbjct 22760 GTGAACATTGAGACCGATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGT 22701 Query 69921 GTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTG 69980 || || || ||||| ||||| ||||| |||||| | || ||||| ||||| || Sbjct 22700 ATCGTAAATGCCCTCGATGCTGTCATCCTTCATGTCGACTAGGAAACATGAAGACAACTG 22641 Query 69981 ATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGA 70040 | || ||| || |||||||| | ||||| |||||||||||||| | || ||| Sbjct 22640 AGCCTGGGGAGTACCGGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAGA 22581 Query 70041 AAGCAGATTGTATGTTTCAA-TAGCTGAT--TCTATATCCCACTGATGAATTCCTATCGC 70097 | || ||||| ||||||| | ||| || | || | | ||| || | || Sbjct 22580 CATAAGGTTGTAGGTTTCAAGCACACGATCGACTTTGTCACCC---CAAATACCCACAGC 22524 Query 70098 GACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTA 70157 |||||||| | ||| ||||| || || || || | ||| || | ||| | ||||| Sbjct 22523 AACACGCATTATCATGTGCTGGGGACGCTCAACAATCTTACCATCAAGTTTGAGTAGGTA 22464 Query 70158 TGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 || || || || ||||| ||||| || | ||| ||||| | ||||| | ||| Sbjct 22463 CGAACGCTCGAGCGTCTTAAAGCCAAAGTACTGGTAGTTGAAGTCACGGTCGTACACAAT 22404 Query 70218 AACAGAATTTAGTTTATCCTT 70238 |||| | || | |||||| Sbjct 22403 GGCAGAGTCCAGCTCATCCTT 22383 >seq209 Length=70751 Score = 140 bits (154), Expect = 4e-28 Identities = 545/850 (64%), Gaps = 10/850 (1%) Strand=Plus/Plus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 || ||||| || || || || |||||||| || ||||| ||||| | | || || || Sbjct 41125 TTCTGGTAGTCGCCGACACGCTTCTCGAAGAAGTTAGTCTTGCCGCCGAGCGAGATGTTC 41184 Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445 |||||||| || || || || || ||| || || | |||| | || | Sbjct 41185 TCCATGAAGTCGAAGGGGTTTGTGGCACGGTACACCTTCTCGTTGCCTAGAGCAACAAGC 41244 Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505 | | || |||||||| || ||||| ||||||| ||| |||||||||| || Sbjct 41245 AGGCGGTCAGCAACAAACTCAATGTACTGCTTCATCAGATCAGCGTTCATTCCTAGCAGA 41304 Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565 || |||||||| || || ||||| || ||||| | ||||| || || || ||| Sbjct 41305 CCGCAGGGCAGAGCCTCGGTCAGGAACTCCTTCTCGATCACGACGGCATCAGTGATGATC 41364 Query 39566 GATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAG 39625 | || | || | || || | | | ||| |||| | ||| || ||| Sbjct 41365 TTTTGCACAAGGTCCTTGCTGGGGCGGTTGTTCAGATGCGAGAACAGCAGGCAAGCAAAG 41424 Query 39626 TCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATT 39685 || || ||||||||||| | | ||| | ||||| || || || || |||||||| Sbjct 41425 TCGGTGTGCAGGCCCTCATCACGAGAAATAAGCTCGTTTGAGAAGGTCAGACCAGGCATG 41484 Query 39686 AGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCT 39745 ||||||||||| ||||| || |||| || || | || || || |||||||| || Sbjct 41485 AGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCGCCTGAGAAAAAGATGCCCTCG 41544 Query 39746 ACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT--GT-ATCCACTTC 39802 || || ||||| ||||| || | || | | | | || || | || ||||||||| Sbjct 41545 ACAGCAGCAAAGGCAACTAGGCGCTGGGCAAACGTCGACTCCTTGTCGGTGATCCACTTC 41604 Query 39803 TGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATA- 39861 | ||||| || || || | || || || || || || ||||| || || || Sbjct 41605 AGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTCAATGGCATTGAACAGGTAT 41664 Query 39862 ATGTTTTTC-ATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAAT 39920 || || | | | || || | || || || || | ||| || |||| || | Sbjct 41665 GTGCGTTGCGAGGGC--TCCTTGATGTAGGTGTCAATCAGCAGCGAGTAGGTTTCAGAGT 41722 Query 39921 GGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCT 39980 |||||||||| ||| ||||| || || || || || | || || | || || |||| Sbjct 41723 GGATGTTTTCCATCATGATCTGGAAACCATAGAAGCAGCGGGCCTCGGGGATCTGCACCT 41782 Query 39981 CTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATG 40040 | | || | || | | |||||| || || || |||||| || ||||| || | Sbjct 41783 CGCCTGAGAAGCGCTCAACGAGATTTTCGTTGACGATGCCATCAGAGGCAGCAAAGAAGG 41842 Query 40041 CCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCA---ATTTATTCCAGTCATTGA 40097 | | | || || || || | || || ||| || |||||||| | || Sbjct 41843 CAAGAATGTGGGAGATGAAGTACTGCTCGTCTTTGTTCAGACGGTTGTTCCAGTCGTGGA 41902 Query 40098 TATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACA 40157 ||| || || | ||| | || ||||| ||||| || || ||||| ||||| ||||||| Sbjct 41903 GATCCTTAGACAGATCAATCTCCTCAGCAGTCCAGAAGGAGGCCTCGGCCTTCTTGTACA 41962 Query 40158 TGTTCCATAT 40167 | | ||| || Sbjct 41963 TCTGCCAGAT 41972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686900565680760