Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016-
01-13] 959 sequences; 30,717,923 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq598 205 1e-47
seq209 140 4e-28
>seq598
Length=260485
Score = 205 bits (226), Expect = 1e-47
Identities = 639/981 (65%), Gaps = 20/981 (2%)
Strand=Plus/Minus
Query 69268 AGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCA---TATTGTATT 69324
|| |||| ||||||||| || || || || ||||||| || ||| || | ||
Sbjct 23353 AGGGCTAGAGATGCTAGGTTGCACACAGCGACCTCATCAGGG---GCACAGTACTCGATA 23297
Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384
||||| || || || || || || || || ||||||| |||||| ||||| |
Sbjct 23296 ATCTCAGTGCACAGGTTCGAACTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGG 23237
Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATA 69444
|| ||| ||| ||||| || ||||| || | ||||| ||| |||||| || | |||
Sbjct 23236 TTGCAGTGGTCTTTGTAGAGCATAAAAGGGTTGCCAGTCTCAGTCTGAGCCTCCAGAATG 23177
Query 69445 GATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAAC---GCTTCTCTTTTTCATAT 69501
| | ||| | | || || | || | || || | ||| || || ||
Sbjct 23176 GCATACCACAGTTTCTGGGCCTTGACAAC---CATGCGACCGCGACCCTCCTTCTCGTAC 23120
Query 69502 TGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTT 69561
| | ||| || || || || || || | ||| |||| || || ||||||||
Sbjct 23119 TTTTCATACAGAGCCTCAAACTCTTCGCCATAGCAATCCGCCAAGCCGGGGCATTCATTG 23060
Query 69562 GGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATC 69621
|| ||||| | | ||| | |||| | || ||| || ||||| || | ||| |||
Sbjct 23059 GGGCACATGAGAGTCCAGTCCTCATTCTTCTCAACACGCTTCATGAACAAGTCGCAGATC 23000
Query 69622 CAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCC-TGTAttttttttAAG 69680
|| || || | || || || | | | |||||| ||||| || | || ||||
Sbjct 22999 CACAGGGCCAAGAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAAG 22940
Query 69681 ATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGG 69740
||||| ||||| | | ||||| ||||||||| || ||||| || || | | |||| ||
Sbjct 22939 -TCGAGGAACTCGAAGACATCAGCATGCCATGGCTCGAGATAAATGGCAAAGGCTCCAGG 22881
Query 69741 TCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGG 69800
||| || ||||| ||||| || | || | ||| ||||| || | || | ||||| ||
Sbjct 22880 TCGCTTGTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGTAGCATGGG 22821
Query 69801 AATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATT 69860
|| || || || || |||| || || |||| ||| ||| || | || ||||||
Sbjct 22820 AACGATGCCGTTCGAAGTACCGTTAGTGCCAGCAATGTAAGAGCCAGTGGCACGAATACG 22761
Query 69861 ACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGT 69920
|| | ||||| || || || ||||| || || || | |||||| || | ||
Sbjct 22760 GTGAACATTGAGACCGATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGT 22701
Query 69921 GTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTG 69980
|| || || ||||| ||||| ||||| |||||| | || ||||| ||||| ||
Sbjct 22700 ATCGTAAATGCCCTCGATGCTGTCATCCTTCATGTCGACTAGGAAACATGAAGACAACTG 22641
Query 69981 ATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGA 70040
| || ||| || |||||||| | ||||| |||||||||||||| | || |||
Sbjct 22640 AGCCTGGGGAGTACCGGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAGA 22581
Query 70041 AAGCAGATTGTATGTTTCAA-TAGCTGAT--TCTATATCCCACTGATGAATTCCTATCGC 70097
| || ||||| ||||||| | ||| || | || | | ||| || | ||
Sbjct 22580 CATAAGGTTGTAGGTTTCAAGCACACGATCGACTTTGTCACCC---CAAATACCCACAGC 22524
Query 70098 GACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTA 70157
|||||||| | ||| ||||| || || || || | ||| || | ||| | |||||
Sbjct 22523 AACACGCATTATCATGTGCTGGGGACGCTCAACAATCTTACCATCAAGTTTGAGTAGGTA 22464
Query 70158 TGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217
|| || || || ||||| ||||| || | ||| ||||| | ||||| | |||
Sbjct 22463 CGAACGCTCGAGCGTCTTAAAGCCAAAGTACTGGTAGTTGAAGTCACGGTCGTACACAAT 22404
Query 70218 AACAGAATTTAGTTTATCCTT 70238
|||| | || | ||||||
Sbjct 22403 GGCAGAGTCCAGCTCATCCTT 22383
>seq209
Length=70751
Score = 140 bits (154), Expect = 4e-28
Identities = 545/850 (64%), Gaps = 10/850 (1%)
Strand=Plus/Plus
Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385
|| ||||| || || || || |||||||| || ||||| ||||| | | || || ||
Sbjct 41125 TTCTGGTAGTCGCCGACACGCTTCTCGAAGAAGTTAGTCTTGCCGCCGAGCGAGATGTTC 41184
Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445
|||||||| || || || || || ||| || || | |||| | || |
Sbjct 41185 TCCATGAAGTCGAAGGGGTTTGTGGCACGGTACACCTTCTCGTTGCCTAGAGCAACAAGC 41244
Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505
| | || |||||||| || ||||| ||||||| ||| |||||||||| ||
Sbjct 41245 AGGCGGTCAGCAACAAACTCAATGTACTGCTTCATCAGATCAGCGTTCATTCCTAGCAGA 41304
Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565
|| |||||||| || || ||||| || ||||| | ||||| || || || |||
Sbjct 41305 CCGCAGGGCAGAGCCTCGGTCAGGAACTCCTTCTCGATCACGACGGCATCAGTGATGATC 41364
Query 39566 GATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAG 39625
| || | || | || || | | | ||| |||| | ||| || |||
Sbjct 41365 TTTTGCACAAGGTCCTTGCTGGGGCGGTTGTTCAGATGCGAGAACAGCAGGCAAGCAAAG 41424
Query 39626 TCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATT 39685
|| || ||||||||||| | | ||| | ||||| || || || || ||||||||
Sbjct 41425 TCGGTGTGCAGGCCCTCATCACGAGAAATAAGCTCGTTTGAGAAGGTCAGACCAGGCATG 41484
Query 39686 AGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCT 39745
||||||||||| ||||| || |||| || || | || || || |||||||| ||
Sbjct 41485 AGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCGCCTGAGAAAAAGATGCCCTCG 41544
Query 39746 ACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT--GT-ATCCACTTC 39802
|| || ||||| ||||| || | || | | | | || || | || |||||||||
Sbjct 41545 ACAGCAGCAAAGGCAACTAGGCGCTGGGCAAACGTCGACTCCTTGTCGGTGATCCACTTC 41604
Query 39803 TGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATA- 39861
| ||||| || || || | || || || || || || ||||| || || ||
Sbjct 41605 AGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTCAATGGCATTGAACAGGTAT 41664
Query 39862 ATGTTTTTC-ATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAAT 39920
|| || | | | || || | || || || || | ||| || |||| || |
Sbjct 41665 GTGCGTTGCGAGGGC--TCCTTGATGTAGGTGTCAATCAGCAGCGAGTAGGTTTCAGAGT 41722
Query 39921 GGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCT 39980
|||||||||| ||| ||||| || || || || || | || || | || || ||||
Sbjct 41723 GGATGTTTTCCATCATGATCTGGAAACCATAGAAGCAGCGGGCCTCGGGGATCTGCACCT 41782
Query 39981 CTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATG 40040
| | || | || | | |||||| || || || |||||| || ||||| || |
Sbjct 41783 CGCCTGAGAAGCGCTCAACGAGATTTTCGTTGACGATGCCATCAGAGGCAGCAAAGAAGG 41842
Query 40041 CCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCA---ATTTATTCCAGTCATTGA 40097
| | | || || || || | || || ||| || |||||||| | ||
Sbjct 41843 CAAGAATGTGGGAGATGAAGTACTGCTCGTCTTTGTTCAGACGGTTGTTCCAGTCGTGGA 41902
Query 40098 TATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACA 40157
||| || || | ||| | || ||||| ||||| || || ||||| ||||| |||||||
Sbjct 41903 GATCCTTAGACAGATCAATCTCCTCAGCAGTCCAGAAGGAGGCCTCGGCCTTCTTGTACA 41962
Query 40158 TGTTCCATAT 40167
| | ||| ||
Sbjct 41963 TCTGCCAGAT 41972
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686900565680760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |