Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016- 01-13] 959 sequences; 30,717,923 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq598 158 2e-33 seq209 105 8e-18 seq710 87.8 2e-12 >seq598 Length=260485 Score = 158 bits (174), Expect = 2e-33 Identities = 1032/1639 (63%), Gaps = 31/1639 (2%) Strand=Plus/Minus Query 110369 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATA-TGCATAGAAGAGAGCTT 110427 |||||||| || |||||||| ||| ||||||| || || | ||||| | || ||| Sbjct 24217 TAGTACATGCCCGTCTTGAGACCTAGTTTCCA-GCCAGCAAAGTGCATGCTGGTGATCTT 24159 Query 110428 GGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAGCGCCC 110487 | ||| || ||| || |||| | ||| | | || |||||||||||| || Sbjct 24158 GCCCATGGTGGGATCTTTCATGTGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACC 24099 Query 110488 CCGTTGTGCCGCCATATCAATGACATCCTTCATCTT---AATTTCCCAAACTGTGCGATA 110544 || | || ||||| | | || | | || ||| |||||||| || || Sbjct 24098 ACGATCAGCAGCCATTTGCA---CAACTGTACGCTGGGAAATCTCCCAAACGGTCTTGTA 24042 Query 110545 GAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCAC 110604 ||| || |||||| | || || ||||| ||||| ||||| || || | Sbjct 24041 CAGAGCTTTAATATCAGCAGGAATGCTAGAGATGTTCTGAATGGAGCCATTGTCCGCAAT 23982 Query 110605 CATGAGATCCTTCATATCCTTGGACCAGAGACCAA--TCTTCTTGAGGTCATTGACGAGG 110662 ||| ||| |||||||| | ||||| | ||||| || || |||||| | ||| Sbjct 23981 AATGCGATTCTTCATATTGTCAGACCATAAACCAAGATCGACT--AGGTCACGTAGGAGC 23924 Query 110663 TGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTG 110722 |||||| | ||||| || || || | | | |||| ||||| | |||| Sbjct 23923 CAGGGGTTGACGACCTGGAACTCGCCAGCAAGAACGCGGCGCTGGTAAATGTTGGATGTG 23864 Query 110723 TATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGT 110782 || ||||| ||||| ||||| || |||| || || | ||| |||||| ||||| ||| Sbjct 23863 TAGGGTTCGAAGCACTCATTGTTGCCCAGAATCTGCGACGTGCTGGCTGTAGGCATGGGT 23804 Query 110783 GCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAG 110842 || | | |||| || || | ||| | || ||| || ||||| ||| | |||| Sbjct 23803 GCAACTAGAAGAGAATTGCGTACACCATGCTGCTTAATCTTCTCCTTTAGAGAAGTCCAG 23744 Query 110843 TCGTA--GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACG 110900 || | | | | || || |||| | ||||||| |||||||| | | |||||||| Sbjct 23743 TCCCACAGGTCA-CTAGGAGTCACAT-CCCACATATCAAACTGCAAGATGCCTTGGGAGA 23686 Query 110901 CGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCT 110960 | |||||||||||| | ||| || | ||| | | | || | ||| || Sbjct 23685 CAGGAGAACCCTCATAAGTTGAGTAAGTACCCTCCGTCTGGGCGATTTCCATTGAAGCAG 23626 Query 110961 CCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTG 111020 || | ||||| || ||||||||||| || | || | || |||||| | Sbjct 23625 TTAGTGCGGCGTGGTAGATGGTTTCAAAAATCTGCTTGTTGAGCTGGCGTGCTTCAGGGG 23566 Query 111021 AATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAA 111080 | ||||| | |||| || || | || || || || || ||||| | ||||| Sbjct 23565 ATTCAAAAGGCATGCGGAGAGCAAGGAAAGCGTCAGCCAGGCCCTGTACACCGACACCAA 23506 Query 111081 TAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAA 111140 | || | ||| ||||| || || | || || || || || ||| || | Sbjct 23505 TGGGACGGTGGCGCATGTTGCTGTTGTGAGCTTCCTGGACAGGGTAGTGATTCACATCGA 23446 Query 111141 TGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAA 111200 ||| |||||||| || ||||| | |||| ||| || || |||| | | ||| Sbjct 23445 TGATGCGGTTTAGGTTGCGAACAACAACTTGGGTGACTTCGTGTAGCTTTTTAAAGTCAT 23386 Query 111201 AAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAG 111260 | | | | | | || | |||||||| | ||||| | ||||| |||| Sbjct 23385 ACTCACCCTTGTTGTAGTCCACGAAGGAAGGAAGGGCTAGAGATGCTAGGTTGCACACAG 23326 Query 111261 CCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCG 111320 | |||||| | |||||| | ||| || || || | ||| ||||| ||| | Sbjct 23325 CGACCTCATCAGGGGCACAGTACTCGATAATCTCAGTGCACAGGTTCGAACTGCGAATGG 23266 Query 111321 TCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCG 111380 | || | ||| || || || ||||| |||||| || ||||||||||| | || Sbjct 23265 TACCTAGATTTTTCTGATTGCTCTTGCGGTTGCAGTGGTCTTTGTAGAGCATAAAAGGGT 23206 Query 111381 TCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAATG 111439 | || ||||| ||||| | | ||||| || | ||| | || | | || | |||| Sbjct 23205 TGCCAGTCTCAGTCTGAGCCTCCAGAATGGCATACCACAGTTTCTGGGCCTTG-ACAACC 23147 Query 111440 GCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACC 111499 | | || |||||| |||||||||| || || || |||||||| || ||| Sbjct 23146 ATGCGACCGCGACCCTCCTTCTCGTACTTTTCATACAGAGCCTCAAACTCTTC-GCCATA 23088 Query 111500 GC-GTCGGAGAGACCTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTGACCACCTTC-- 111555 || || | | | | || || || | || || | |||| ||| | || | ||| Sbjct 23087 GCAATCCGCCA-AGCCGGGGCATTCATTGGGGCACATGAGAGTCCA--GTCCTCATTCTT 23031 Query 111556 CTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-CACC 111614 |||||| ||||||||||| | ||| |||||||||| | || || || | | ||| Sbjct 23030 CTCAACACGCTTCATGAACAAGTCGCAGATCCACAGGGCCAAGAATAGGTCACGAGCACG 22971 Query 111615 GAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCC 111674 || | ||||| | || ||||| ||||| || |||||||| | || ||| || |||| Sbjct 22970 GA-CTTCTTCCTTTCCGTGGTTCTTGCGTAAGTCGAGGAACTCGAAGACATCAGCATGCC 22912 Query 111675 ATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGC 111731 ||||||| ||||| | || | | ||| ||| ||| | || | ||||| | Sbjct 22911 ATGGCTCGAGATAAATGGCAAAGGCTCCAGGTCGCTTGTTTCCACCCTGGTCAACATAAC 22852 Query 111732 GCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCC 111791 | || ||| ||| || || || ||||| |||| || || | || ||| || || | Sbjct 22851 GGGCGGTGTTGTTGAAAACACGTAGCATGGGAACGATGCCGTTCGAAGTACCGTTAGTGC 22792 Query 111792 CCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCC 111851 | ||| ||| | |||| | | | || | | | || ||||| |||||| Sbjct 22791 CAGCAATGTAAGAGCCAGTGGCACGAATACGGTGAACATTGAGACCGATACCACCAGCCA 22732 Query 111852 ACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCT 111911 ||| || || ||||| | | || || | || || || | ||| ||| |||| Sbjct 22731 TCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAAATGCCCTCGATGCTGTCATCCT 22672 Query 111912 TGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGG 111971 | || ||| ||||| || |||| ||| | || ||||| ||||| ||||| | Sbjct 22671 TCATGTCGACTAGGAAACATGAAGACAACTGAGCCTGGGGAGTACCGGCATTAAAGAGCG 22612 Query 111972 TTGGTGTTGCGTGAATGAA 111990 | |||| ||||||| |||| Sbjct 22611 TAGGTGATGCGTGAGTGAA 22593 >seq209 Length=70751 Score = 105 bits (116), Expect = 8e-18 Identities = 339/520 (65%), Gaps = 7/520 (1%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| || |||||||| || |||||||| || ||||||||| ||||| Sbjct 41419 GCAAAGTCGGTGTGCAGGCCCTCATCACGAGAAATAAGCTCGTTTGAGAAGGTCAGACCA 41478 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||||||||| ||||| || ||| | || | | ||| | || ||||| ||||| Sbjct 41479 GGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCGCCTGAGAAAAAGATG 41538 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCAAA 122837 ||||| ||| ||||| |||| ||||| | ||| || | ||| | ||| | | Sbjct 41539 CCCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCAAACG-TCGACTCCTTGTCGGTGAT 41597 Query 122838 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 122897 ||| |||| ||||| | ||||| || || || | ||| | ||||| | || Sbjct 41598 CCACTTCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTCAATGGCATTGAA 41657 Query 122898 TAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTC 122957 | | | || || ||||| ||||| ||||||||| || || ||||| Sbjct 41658 CAGGTATGTGCGTTGCGAGGGCTCCTTGATGTAGGTGTCAATCAGCAGCGAGTAGGTTTC 41717 Query 122958 GCCATGAACCATTT-CATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATCT 123016 || | ||| ||| ||| | || | | ||||| |||| || ||| |||| Sbjct 41718 AGAGTGGATGTTTTCCATCATGATCTGGA-AACCATAGAAGCAGCGGGCCTCGGGGATCT 41776 Query 123017 GAACCTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAA 123076 | ||||| | | || | | || ||| || || || ||||| || |||||| Sbjct 41777 GCACCTCGCCTGAGAAGCGCTCAACGAGATTTTCGTTGACGATGCCATCAGAGGCAGCAA 41836 Query 123077 AGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCA---GGGTCTTCCAGT 123133 |||| || || |||| ||||| | || || | || |||| || | ||||||| Sbjct 41837 AGAAGGCAAGAATGTGGGAGATGAAGTACTGCTCGTCTTTGTTCAGACGGTTGTTCCAGT 41896 Query 123134 CGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 123173 ||| ||||| || |||| ||||| || || |||||||| Sbjct 41897 CGTGGAGATCCTTAGACAGATCAATCTCCTCAGCAGTCCA 41936 >seq710 Length=50993 Score = 87.8 bits (96), Expect = 2e-12 Identities = 210/313 (67%), Gaps = 10/313 (3%) Strand=Plus/Plus Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689 ||||||||||| ||||| || | || ||||| || | ||| || | |||| ||| Sbjct 35501 GCATCAATCTCGTCAATAAAAATGATGCATGGCGCGTTCTTGCGCGCCGTAGCAAAAAGA 35560 Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGT--TTGCGGCAGAGC 11747 || || || | | |||||| || ||||||||||| ||||| | || || || | Sbjct 35561 TCACGCACACGCGACGGACCCACGCCGACAAACATCTCGACAAACTCGGAGCCGCTGA-C 35619 Query 11748 ACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCG 11807 || || ||| || || ||| || || || |||| ||| || || ||||| |||| Sbjct 35620 GCT-GAAGAACGGAACGCCTGACTCGCCAGCCGTGGCCTTGGCTAGCAGCGTCTTGCCCG 35678 Query 11808 TACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC---ACTTCCAAAAT 11864 | || || |||| || | ||||| || |||||||||||||| || |||| | Sbjct 35679 TTCCCGGAGGGCCCGATAGGATAGCGCCACGCGGGATCTTGGCACCCAGACGCACAAACT 35738 Query 11865 ATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGCCGCGTCAA 11924 | ||||| | |||||| || | ||||| ||| | || | |||||| |||| | Sbjct 35739 ---TTTCGGGCTTCTTGAGGAACTGCACAAACTCCATGATCTCGACCTTGGCCTCGTCCA 35795 Query 11925 TCCCCTCAACATC 11937 | || | ||||| Sbjct 35796 TTCCGGCCACATC 35808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628024471466400