Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016- 01-13] 959 sequences; 30,717,923 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq249 147 7e-30 seq234 125 2e-23 seq753 109 2e-18 seq330 107 6e-18 >seq249 Length=99862 Score = 147 bits (162), Expect = 7e-30 Identities = 174/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 140502 TTTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTA 140561 |||||| |||||||| | | ||||| | |||||||||||||| || || || || Sbjct 88120 TTTTACTGGCCACCACGCAGACGCAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTG 88179 Query 140562 TAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGA 140621 || || || | || || ||||| ||||| || |||||||| ||||| ||||| ||||| Sbjct 88180 TAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGG 88239 Query 140622 TCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGAT 140681 || ||||| || || || |||||||| || || | || ||||| ||||| | |||||| Sbjct 88240 TCCGGAGGGATACCCTCCTTATCCTGGATCTTGGACTTGACATTGTCAATGGTATCAGAG 88299 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || ||||| || |||| ||||| || || | || || || || || ||||| Sbjct 88300 GACTCGACTTCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 88355 Score = 145 bits (160), Expect = 2e-29 Identities = 167/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || | ||||||||||| ||||| ||||| || | Sbjct 88349 TTTGCATACCACCACGCAGACGCAGGACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGT 88408 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| ||||| || ||||| || ||||| ||||| ||||| | Sbjct 88409 AGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGT 88468 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | |||||||| || || || ||||| || || | || || || ||||| | || || | Sbjct 88469 CCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAGG 88528 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAA 140727 || ||||| || |||| ||||||||||| || || || |||| Sbjct 88529 ACTCGACTTCGAGGGTAATGGTCTTTCCGGTAAGGGTCTTGACAA 88573 Score = 131 bits (144), Expect = 5e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || ||||| ||||||||||| || ||||| || || || Sbjct 88637 CATACCACCACGCAGGCGGAGCACTAGATGGAGAGTAGACTCCTTCTGAATGTTGTAGTC 88696 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| ||||| || |||||||| ||||| ||||| ||||| || || Sbjct 88697 GGACAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGG 88756 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || ||||| || |||| || || || ||||| | ||| || | || Sbjct 88757 AGGGATACCCTCCTTGTCCTGGATCTTAGACTTAACGTTGTCAATAGTATCCGAGGACTC 88816 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713 || || || || | ||||| || || Sbjct 88817 CACCTCGAGGGTGATGGTCTTGCCAGT 88843 >seq234 Length=175085 Score = 125 bits (138), Expect = 2e-23 Identities = 191/272 (70%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 ||||| |||||||| || ||||| || || || | |||||| || || || || || Sbjct 65238 GCTGTCATTACTGTCCCCGCCTACTTCAACGACTCTCAGCGTCAGGCTACCAAGGACTCT 65297 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || |||||| || || || || || | || ||||| || ||||||||||| || ||| Sbjct 65298 GGTCTCATTGCTGGCTTGAACGTCCTGCGTATCATTAACGAGCCCACTGCTGCTGCCATT 65357 Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789 || || || ||||| || | | || || || | || || || ||| | ||| Sbjct 65358 GCCTACGGTCTTGACAAGAAGGTCGAGGGTGAGCGCAACGTCCTGATCTTCGATCTGGGT 65417 Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849 ||||||||||| ||||| || || || || |||| || || || || || || || | Sbjct 65418 GGTGGTACTTTCGATGTCTCGCTGCTGACCATTGAGGATGGTATCTTCGAGGTCAAGTCC 65477 Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGA 349881 || |||||||| || ||||| ||||| || || Sbjct 65478 ACCGCTGGTGACACCCATCTGGGTGGTGAGGA 65509 >seq753 Length=27693 Score = 109 bits (120), Expect = 2e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 || ||||| || || ||||| | || || ||||| || || || || ||||| ||||| Sbjct 10743 TTCTGAATGTTGTAGTCAGACAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 10802 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 || || ||||| || || ||||| || || || |||||||| || | || ||||| || Sbjct 10803 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 10862 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729 || | || || | ||||| || || |||| ||||| || || || || || || ||| Sbjct 10863 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 10922 Query 140730 ATCTGCAT 140737 |||||||| Sbjct 10923 ATCTGCAT 10930 >seq330 Length=314808 Score = 107 bits (118), Expect = 6e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 ||||||||||| | | || ||||| || || || ||||| || || || || || || Sbjct 237246 ATACCACCACGCAGGCGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 237187 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 || | || || ||||| ||||| || || ||||||||||| | || ||||| || || Sbjct 237186 GACAGAGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCCGGG 237127 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687 ||||| || || || ||||| || || | || || || || |||| || || | || Sbjct 237126 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCG 237067 Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729 || || || |||| ||||| || || || || || || ||| Sbjct 237066 ACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAAA 237025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515235781785077