Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016- 01-13] 959 sequences; 30,717,923 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq598 351 1e-91 >seq598 Length=260485 Score = 351 bits (388), Expect = 1e-91 Identities = 880/1328 (66%), Gaps = 28/1328 (2%) Strand=Plus/Minus Query 78507 GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTC 78566 ||||||||| || || |||||| |||| ||||||| ||||| || ||||| ||| Sbjct 23906 GAACTCGCCAGCAAGAACGCGGCGCTGGTAAATGTTGGATGTGTAGGGTTCGAAGCACTC 23847 Query 78567 GTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATT 78626 ||||| |||| ||||| | || ||| || ||||||||||| || || |||||||| Sbjct 23846 ATTGTTGCCCAGAATCTGCGACGTGCTGGCTGTAGGCATGGGTGCAACTAGAAGAGAATT 23787 Query 78627 CCGAAGACCATGCGTCTTGATCTCGACCTTTAGG------CCGTCCCAAAATTCATTCGC 78680 || | ||||||| ||| |||| ||||||| | |||||| | ||| | | Sbjct 23786 GCGTACACCATGCTGCTTAATCTTCTCCTTTAGAGAAGTCCAGTCCCACAGGTCACTAGG 23727 Query 78681 CGCGATCCCCCACATGTCCGGTTGAAGGATACCCTCGGACGCCGGCGACCCCTTGAACGT 78740 | | ||||||| || || | ||| || | ||| | || || |||| | || Sbjct 23726 AGTCACATCCCACATATCAAACTGCAAGATGCCTTGGGAGACAGGAGAACCCTCATAAGT 23667 Query 78741 CTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCATGACTCGAGCAGGGCCGCGTGGTACAC 78800 ||||| |||||| || ||||| ||| ||| | || || |||||||| | Sbjct 23666 TGAGTAAGTACCCTCCGTCTGGGCGATTTCCATTGAAGCAGTTAGTGCGGCGTGGTAGAT 23607 Query 78801 AGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCGTCGAACGAAAGGCCGAG 78860 | || || || ||||||||||| ||| || | | || || | | || ||| Sbjct 23606 GGTTTCAAAAATCTGCTTGTTGAGCTGGCGTGCTTCAGGGGATTCAAAAGGCATGCGGAG 23547 Query 78861 CATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTT 78920 | ||| | || ||||||||||| || |||| | | || || |||||||||||||| Sbjct 23546 AGCAAGGAAAGCGTCAGCCAGGCCCTGTACACCGACACCAATGGGACGGTGGCGCATGTT 23487 Query 78921 GCTCTTTCGGGCCGCCTCGGTCGGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACG 78980 ||| || | || ||| | ||||| ||| |||||||| |||||| ||||| || Sbjct 23486 GCTGTTGTGAGCTTCCTGGACAGGGTAGTGATTCACATCGATGATGCGGTTTAGGTTGCG 23427 Query 78981 CGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAATGATTTCCTT--TG--- 79035 || || | || || |||| | || || ||| | | | |||| || Sbjct 23426 AACAACAACTTGGGTGACTTCGTGTAGCTTTTTAAAGTCATACTCAC--CCTTGTTGTAG 23369 Query 79036 ---ATGAAAGTCGGTAGGCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTA 79092 | ||| | || ||| || ||||| ||||||||||| || ||| || ||| | Sbjct 23368 TCCACGAAGGAAGGAAGGGCTAGAGATGCTAGGTTGCACACAGCGACCTCATCAGGGGCA 23309 Query 79093 GAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTG--ATGGTGCCGATGTTCTTCT 79150 | |||||| || || ||||||| || || ||| ||||| || | || |||| Sbjct 23308 CAGTACTCGATAATCTCAGTGCACAGGTTCGA--ACTGCGAATGGTACCTAGATTTTTCT 23251 Query 79151 GGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCT 79210 | |||||||| ||| ||| ||| |||||| ||| | || | || |||||| || Sbjct 23250 GATTGCTCTTGCGGTTGCAGTGGTCTTTGTAGAGCATAAAAGGGTTGCCAGTCTCAGTCT 23191 Query 79211 GACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCT 79270 || || |||| | | | ||| | | | ||||| ||||||| | ||||||| Sbjct 23190 GAGCCTCCAGAATGGCATACCACAGTTTCTGGGCCTTGACAACCATGCGACCGCGACCCT 23131 Query 79271 GTGCGACGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCG 79330 ||||| | |||| | | || | || |||||| ||| | || ||| | Sbjct 23130 CCTTCTCGTACTTTTCATACAGAGCCTCAAACTCTTCGCCATAGCAATCCGCCAAGCCGG 23071 Query 79331 GGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGA 79390 |||| || | |||||||| || ||||||||| | ||||||||| || |||||| | Sbjct 23070 GGCATTCATTGGGGCACATGAGAGTCCAGTCCTCATTCTTCTCAACACGCTTCATGAACA 23011 Query 79391 GGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGT 79450 ||| ||||||||||||| ||| ||||| || ||| | || || | || |||| Sbjct 23010 AGTCGCAGATCCACAGGGCCAAGAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGT 22951 Query 79451 TCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGA 79510 || || | ||||| || || | || || || ||||| ||||| ||||| ||||| | Sbjct 22950 TCTTGCGTAAGTCGAGGAACTCGAAGACATCAGCATGCCATGGCTCGAGATAAATGGCAA 22891 Query 79511 ACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTC 79570 | | || |||||| || ||||||| || || ||||| |||||||||||||| | Sbjct 22890 AGGCTCCAGGTCGCTTGTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACAC 22831 Query 79571 GGAGCATGGGCACGATGCCGTCGGCGACG--CCGTTCGTCCCGTTGATTCGTGTACCGCT 79628 | |||||||| |||||||||| ||| | ||||| || || || | || | Sbjct 22830 GTAGCATGGGAACGATGCCGT--TCGAAGTACCGTTAGTGCCAGCAATGTAAGAGCCAGT 22773 Query 79629 CGCCCGAAT--GTTCGAGCAGTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCG 79686 || ||||| | | || || | || ||||| || || | | |||||| || || Sbjct 22772 GGCACGAATACGGT-GAACA-TTGAGACCGATACCACCAGCCATCTTGGAAATCATGGCA 22715 Query 79687 CACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAG 79746 || |||||| || ||||| ||||||||||| ||| |||||||| |||| ||||| Sbjct 22714 CAAGTCTTGAGGGTATCGTAAATGCCCTCGATGCTGTCATCCTTCATGTCGACTAGGAAA 22655 Query 79747 CAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTG 79806 || |||| ||| | | | |||||||| || ||||| || || | ||||| ||| Sbjct 22654 CATGAAGACAACTGAGCCTGGGGAGTACCGGCATTAAAGAGCGTAGGTGATGCGTGAGTG 22595 Query 79807 AAGAACTT 79814 |||||||| Sbjct 22594 AAGAACTT 22587 Score = 221 bits (244), Expect = 1e-52 Identities = 868/1354 (64%), Gaps = 32/1354 (2%) Strand=Plus/Plus Query 19166 GAGACATACGACCTGATGAGCCAG-AAGTTCTTCACGCACGCGACGCCGACCCTTTTCAA 19224 || || ||| |||| ||| | || ||||||||||| ||||| | || || || || || Sbjct 22563 GAAACCTACAACCTTATGT-CTAGCAAGTTCTTCACTCACGCATCACCTACGCTCTTTAA 22621 Query 19225 CGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAG 19284 |||||||| | | | ||| |||| ||||||||||| | |||||||||||||| Sbjct 22622 TGCCGGTACTCCCCAGGCTCAGTTGTCTTCATGTTTCCTAGTCGACATGAAGGATGACAG 22681 Query 19285 CATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGG 19344 ||| |||||||| ||||| || |||||| || || || |||||| | | || || Sbjct 22682 CATCGAGGGCATTTACGATACCCTCAAGACTTGTGCCATGATTTCCAAGATGGCTGGTGG 22741 Query 19345 TATCGGGATCCACTGCTCGAA-TATCCGGTCGAGTGGTACACGAATCAATGGGACGAACG 19403 |||||| || | || || ||| || | | ||| | || ||| || |||| Sbjct 22742 TATCGGTCTCAA-TGTTCACCGTATTCGTGCCACTGGCTCTTACATTGCTGGCACTAACG 22800 Query 19404 GAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCA 19463 | | |||| ||||| || ||||| || || ||||||||||| ||| | || || Sbjct 22801 GTACTTCGAACGGCATCGTTCCCATGCTACGTGTTTTCAACAACACCGCCCGTTATGTTG 22860 Query 19464 ACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGG 19523 ||||||| || ||| || || | || ||||| || |||||||||||||| || | Sbjct 22861 ACCAGGGTGGAAACAAGCGACCTGGAGCCTTTGCCATTTATCTCGAGCCATGGCATGCTG 22920 Query 19524 ACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCG 19583 | ||| | || |||||||| | ||| |||||| || | || || | || ||| | Sbjct 22921 ATGTCTTCGAGTTCCTCGACTTACGCAAGAACCACGGAAAGGAAGAAGTCCGTGCTCGTG 22980 Query 19584 ACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAG 19643 |||| ||| |||| ||||||| ||| | |||||| || ||||||||| | || | Sbjct 22981 ACCTATTCTTGGCCCTGTGGATCTGCGACTTGTTCATGAAGCGTGTTGAGAAGAATGAGG 23040 Query 19644 AATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGT 19703 | ||| || |||||||| | |||||||| ||| | | || ||| ||||| | || Sbjct 23041 ACTGGACTCTCATGTGCCCCAATGAATGCCCCGGCTTGGCGGATTGCTATGGCGAAGAGT 23100 Query 19704 TCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCG-GTTCAAGAAGGTGGTCCGGGCC 19762 | | | |||| | |||| |||| || | || | ||| ||| |||| Sbjct 23101 TTGAGGCTCTGTATGAAAAGTACGAGAAGGAGGGTCGCGGTC-GCATGGTTGTCAAGGCC 23159 Query 19763 CGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGTGC 19822 | | | | ||| | | | || | ||| ||||| |||| || | ||| | Sbjct 23160 CAGAAACTGTGGTATGCCATTCTGGAGGCTCAGACTGAGACTGGCAACCCTTTTATGCTC 23219 Query 19823 TACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGAT--CAAGTCGT 19880 ||||| ||| | ||| |||| |||||||| || | || | || ||| | Sbjct 23220 TACAAAGACCACTGCAACCGCAAGAGCAATCAGAAAAATCTAGGTACCATTCGCAGT--T 23277 Query 19881 CCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATC 19940 | |||||||| ||||| || || ||| | || || ||| || ||||| || | Sbjct 23278 CGAACCTGTGCACTGAGATTATCGAGTACTGTGCCCCTGATGAGGTCGCTGTGTGCAACC 23337 Query 19941 TGGCGTCCCTGTGCCTGCCGACTTTCGTCAAGGCCTCCTCC---------TTCGACTTTG 19991 | || || || ||| || | ||||| || || | | | |||||| Sbjct 23338 TAGCATCTCTAGCCCTTCCTTCCTTCGT---GGACTACAACAAGGGTGAGTATGACTTTA 23394 Query 19992 CCAAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGA 20051 || | |||| || |||| || || || || || || ||| |||||||| || Sbjct 23395 AAAAGCTACACGAAGTCACCCAAGTTGTTGTTCGCAACCTAAACCGCATCATCGATGTGA 23454 Query 20052 ACTTTTACCCGACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCG 20111 | ||||| | ||| || | ||| || ||||||||||| || || | ||| Sbjct 23455 ATCACTACCCTGTCCAGGAAGCTCACAACAGCAACATGCGCCACCGTCCCATTGGTGTCG 23514 Query 20112 GCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCCC--AA 20169 | || ||||||||||| |||| |||| | ||| || | | || || ||||| | Sbjct 23515 GTGTACAGGGCCTGGCTGACGCTTTCCTTGCTCTCCGCATGCCTTTTGA--ATCCCCTGA 23572 Query 20170 GGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATC 20229 || ||| ||||||||||| || || || || | |||||||| || || | || Sbjct 23573 AGCACGCCAGCTCAACAAGCAGATTTTTGAAACCATCTACCACGCCGCACTAACTGCTTC 23632 Query 20230 GTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCGA 20289 ||| ||||| | ||| || | ||| || | |||| || || | ||| | Sbjct 23633 AATGGAAATCGCCCAGACGGAGGGTACTTACTCAACTTATGAGGGTTCTCCTGTCTCCCA 23692 Query 20290 GGGTATCCTCCAGCCGGACATGTGGGGCGTCACTGAGAATGA------GTTTTGGAGCGC 20343 || ||| | ||| || ||||||| || ||| | ||| | |||| | Sbjct 23693 AGGCATCTTGCAGTTTGATATGTGGGATGTGACTCCTAGTGACCTGTGGGACTGGACTTC 23752 Query 20344 CCTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCC 20403 || |||| |||| ||| || || | ||||| || | || || || |||||||| Sbjct 23753 TCTAAAGGAGAAGATTAAGCAGCATGGTGTACGCAATTCTCTTCTAGTTGCACCCATGCC 23812 Query 20404 GACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAA 20463 || ||| || | ||||| |||| ||||| ||| ||||| || ||||| |||| Sbjct 23813 TACAGCCAGCACGTCGCAGATTCTGGGCAACAATGAGTGCTTCGAACCCTACACATCCAA 23872 Query 20464 CATCTACTTGCGTCGTACACTGGCCGGTGAGTTC 20497 ||| ||| ||| || || || || |||||| Sbjct 23873 CATTTACCAGCGCCGCGTTCTTGCTGGCGAGTTC 23906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548518224558960