Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016- 01-13] 959 sequences; 30,717,923 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq598 183 3e-41 seq209 145 8e-30 seq54 104 3e-17 >seq598 Length=260485 Score = 183 bits (202), Expect = 3e-41 Identities = 404/596 (68%), Gaps = 16/596 (3%) Strand=Plus/Plus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254 ||||| || || ||||||| |||||| | | ||||| | ||| || ||| || Sbjct 22515 ATGCGTGTTGCTGTGGGTATTTGGGGTGACAAAGTCGATCGTGTGCTTGAAACCTACAAC 22574 Query 53255 TTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311 | ||| ||| |||| ||| || ||||| | || || || || || || ||||| Sbjct 22575 CTTATGTCTAGC---AAGTTCTTCACTCACGCATCACCTACGCTCTTTAATGCCGGTACT 22631 Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 || ||||| |||| || ||||| || | |||||||||||| ||||| ||| Sbjct 22632 CCCCAGGCTCAGTTGTCTTCATGTTTCCTAGTCGACATGAAGGATGACAGCATCGAGGGC 22691 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431 || ||||| || |||||| |||||| || |||||| | | |||||||||||| || Sbjct 22692 ATTTACGATACCCTCAAGACTTGTGCCATGATTTCCAAGATGGCTGGTGGTATCGGTCTC 22751 Query 53432 CACTGCTCGAACGTC--CGTGCGAACGGCACACCAATCAAGGGGACGAACGG--CGTCGC 53487 | || || | ||| ||||| | ||| | || || || ||||| | ||| Sbjct 22752 AA-TGTTC-ACCGTATTCGTGCCACTGGCTCTTACATTGCTGGCACTAACGGTACTTCGA 22809 Query 53488 CGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGG 53547 | || ||||| || ||||| || || ||||||||||| ||||| || || ||||||| Sbjct 22810 --ACGGCATCGTTCCCATGCTACGTGTTTTCAACAACACCGCCCGTTATGTTGACCAGGG 22867 Query 53548 TGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTAT 53607 ||| ||||| || | || ||||| || |||||||| ||||| || || | | Sbjct 22868 TGGAAACAAGCGACCTGGAGCCTTTGCCATTTATCTCGAGCCATGGCATGCTGATGTCTT 22927 Query 53608 GGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGT 53666 ||||| ||||| | || ||| || || | ||||| | || ||| |||||||| | Sbjct 22928 CGAGTTCCTCGACTTACGCAAGAACCACGGAAAGGAAGAAGTCCG-TGCTCGTGACCTAT 22986 Query 53667 TTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGT 53726 | || |||||||| ||| | |||||| | || |||||| | ||||| ||| Sbjct 22987 TCTTGGCCCTGTGGATCTGCGACTTGTTCATGAAGCGTGTTGAGAAGAATGAGGACTGGA 23046 Query 53727 ACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTT 53782 || |||||||| || || ||||||||| | || | ||| || || |||||| Sbjct 23047 CTCTCATGTGCCCCAATGAATGCCCCGGCTTGGCGGATTGCTATGGCGAAGAGTTT 23102 Score = 89.7 bits (98), Expect = 6e-13 Identities = 131/182 (72%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 55744 GACGGTGTGGGAGATTCCACAGA--AGAGTCTGATTGACATGAGTGCTGATCGTGGTGCG 55801 ||| || ||||||||| | ||| | ||| || | | ||| ||||||||||||||| Sbjct 24047 GACCGTTTGGGAGATTTCCCAGCGTACAGT-TG-TGCAAATGGCTGCTGATCGTGGTGCT 24104 Query 55802 TACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAAGTTG 55861 | ||| ||||| || |||||||| ||||| |||| | |||| | ||| |||| | Sbjct 24105 TTCATTGACCAATCGCAGTCTCTAAACATTCACATGAAAGATCCCACCATGGGCAAGATC 24164 Query 55862 AGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGG 55921 | | ||||||||| || ||||| || ||||||||||| |||||||| |||| Sbjct 24165 ACCAGCATGCACTTTGCTGGCTGGAAACTAGGTCTCAAGACGGGCATGTACTACTTGCGT 24224 Query 55922 AC 55923 || Sbjct 24225 AC 24226 Score = 82.4 bits (90), Expect = 8e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 55096 TGACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCAT 55155 ||||||| | ||||| |||||||| || | ||||| ||| ||||| ||||| |||| Sbjct 23387 TGACTTTAAAAAGCTACACGAAGTCACCCAAGTTGTTGTTCGCAACCTAAACCGCATCAT 23446 Query 55156 CGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCAT 55215 ||| |||| ||||||| | | || | ||| |||| | || ||||| ||||| Sbjct 23447 CGATGTGAATCACTACCCTGTCCAGGAAGCTCACAACAGCAACATGCGCCACCGTCCCAT 23506 Query 55216 CGCCATCGGTGTACAGGGCTTGGCCGAC 55243 | |||||||||||||| |||| ||| Sbjct 23507 TGGTGTCGGTGTACAGGGCCTGGCTGAC 23534 >seq209 Length=70751 Score = 145 bits (160), Expect = 8e-30 Identities = 535/822 (65%), Gaps = 32/822 (4%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || ||||| ||||| || || ||||| ||||| || | | ||||||||||||||| Sbjct 41131 TAGTCGCCGACACGCTTCTCGAAGAAGTTAGTCTTGCCGCCGAGCGAGATGTTCTCCATG 41190 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTC----CCCAAACTGTGCCATG-A 74577 ||||||| ||||| | |||| ||| | |||||| || | | | || | | Sbjct 41191 AAGTCGAAGGGGTTTGTGGCACGGTACAC---CTTCTCGTTGCCTAGA--GCAACAAGCA 41245 Query 74578 GGCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTT 74637 |||| || || ||||| | |||||||||| |||| | || | ||| || | || Sbjct 41246 GGCGGTCAGCAACAAACTCAATGTACTGCTTCATCAGATCAGCGTTCATTCCTAGCAGAC 41305 Query 74638 TGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCC-CATTGGACAATC 74696 ||| ||||| |||||||| | ||||| |||| | | || || || || | ||| Sbjct 41306 CGCAGGGCAGAGCCTCGGTCAGGAACTCCTTCTCGATCACGACGGCATCAGTG-ATGATC 41364 Query 74697 TTGTG---AATGTCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGC 74752 || || || ||| ||| |||| || | |||| || ||| | ||| | || | | Sbjct 41365 TTTTGCACAAGGTCCTTGCTGGGGCGGTTGT---TCAGATGCGAGAACAGCAGGCAAG-C 41420 Query 74753 AAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGG 74812 ||| || ||| ||| ||||| | || | || || || || | || ||||| Sbjct 41421 AAAGTCGGTGTGCAGGCCCTCATCACGAGAAATAAGCTCGTTTGAGAAGGTCAGACCAGG 41480 Query 74813 CATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCC 74872 ||| || |||||||| || ||| ||||||| ||||| || ||| |||||||| Sbjct 41481 CATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCGCCTGAGAAAAAGATGCC 41540 Query 74873 TTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATC---GGAAGTCATCCA 74929 |||||| |||||||| || ||||| || || |||| | || | || ||||| Sbjct 41541 CTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCAAACGTCGACTCCTTGTCGGTGATCCA 41600 Query 74930 AGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGAC-AGTATCGATCGCTTGGAAGA 74988 || ||||||| || || || || || ||||||| ||| || || || | ||| | Sbjct 41601 CTTCAGAGCCCAGTCGGCCTTGCGGCGGAT-GCAGGGAATAGTGTCAATGGCATTGAACA 41659 Query 74989 GGCTTGCCTTCTCTTCG--GGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTC 75046 || || | | | || || ||||||| | ||||||||| || ||||| || || Sbjct 41660 GGTATG--TGCGTTGCGAGGGCTCCTTGATGTAGGTGTCAATCAGCAGCGAGTAGGTTTC 41717 Query 75047 CGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTG 75106 || || || || | | |||| | | ||||| | || ||||| | ||||| Sbjct 41718 AGAGTGGATGTTTTCCATCATGATCTGGAAACCATAGAAGCAGCGGGCCTCGGGGATCTG 41777 Query 75107 TACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAA 75166 || || ||| || | ||| ||| || |||||||||| || ||||| || || Sbjct 41778 CACCTCGCCTGAGAAGCGCTCAACGAGATTTTCGTTGACGATGCCATCAGAGGCAGCAAA 41837 Query 75167 AAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGT---TTGTCCCAATC 75223 || || || | ||| |||| |||| || | | || |||| ||| || Sbjct 41838 GAAGGCAAGAATGTGGGAGATGAAGTACTGCTCGTCTTTGTTCAGACGGTTGTTCCAGTC 41897 Query 75224 CTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 | || ||| | || |||||||||||| | |||||||| Sbjct 41898 GTGGAGATCCTTAGACAGATCAATCTCCTCAGCAGTCCAGAA 41939 >seq54 Length=183442 Score = 104 bits (114), Expect = 3e-17 Identities = 173/248 (70%), Gaps = 4/248 (2%) Strand=Plus/Minus Query 117326 GCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTC 117385 ||||||||| |||||||||||||||| |||||| | ||||| ||||||| ||| Sbjct 110590 GCAGCATCCGAACCACCAGCAAGACGCGAACCGAAGTTACCACTGGGCTCCAGACAGTTT 110531 Query 117386 AGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCC 117445 | |||||||| || ||||||| ||||||| | ||| || ||| ||| || Sbjct 110530 ATGTTGTTGGAACCGACAAAGTCCTGAGCCAGACCAATAATGGTTTGTTGTAGGGATGCT 110471 Query 117446 TCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATG 117505 || || || || || | || || | | || | || ||||||| | | |||||||| Sbjct 110470 TCTCCGTGTTGGTAGGAGGTATGTCCAGAAACAAAACCAGCCAGCTCAACAACCTTCATA 110411 Query 117506 TC--TGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCA 117563 || ||| | ||| || ||| ||| || ||||| ||||| ||||||| ||||| | Sbjct 110410 TCCTGGAC--AATGTTTTTGCTGAAGCACGCGTAAATGACCTTCCGCTGACCAGGCTTAA 110353 Query 117564 GACCATCC 117571 |||||| Sbjct 110352 AGCCATCC 110345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547209440248200