Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016- 01-13] 959 sequences; 30,717,923 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq598 266 4e-66 seq249 181 1e-40 seq753 145 9e-30 seq330 145 9e-30 seq54 87.8 2e-12 >seq598 Length=260485 Score = 266 bits (294), Expect = 4e-66 Identities = 1133/1760 (64%), Gaps = 69/1760 (4%) Strand=Plus/Minus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| |||| |||| |||||||||||||||||||| || |||||||| | |||| Sbjct 24232 GCCTGCGTACGCAAGTAGTACATGCCCGTCTTGAGACCTAGTTTCCAGCCAGCAAAGTGC 24173 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 || ||| ||| | | ||||| | | |||| ||||| |||||||| || || Sbjct 24172 ATGCTGGTGATCTTGCCCATGGTGGGATCTTTCATGTGAATGTTTAGAGACTGCGATTGG 24113 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCAT 80211 |||||||| |||||||| || ||||||| | || || || | ||| ||||| Sbjct 24112 TCAATGAAAGCACCACGATCAGCAGCCATTTGCACAACTGTACGCTGGGAAATCTCCCAA 24053 Query 80212 ACTGTACGATACAC--CTTACGAAGCTCCTCTGGAATG-TCCAGATTTT--GCACACTGC 80266 || || |||| ||| || || | |||||| | |||| || | | || Sbjct 24052 ACGGTCTTGTACAGAGCTTT--AATATCAGCAGGAATGCTAGAGATGTTCTGAATGGAGC 23995 Query 80267 CACCGTCCTTTACAATTTGATTTTTCA-ATT--CAGACGTCCAGACACCAAGCTTGTGCA 80323 || |||| | ||| |||| |||| ||| ||||| || | |||||| | | | Sbjct 23994 CATTGTCCGCAATAATGCGATTCTTCATATTGTCAGAC---CATAAACCAAGATCGACTA 23938 Query 80324 GATCTTTCACA-AGGTGCTTGTTAATCATGACA---AACTCTCCCGCGAGGGTGCGACGC 80379 | || || ||| || | | | ||| ||||| || || || ||| ||| Sbjct 23937 GGTC----ACGTAGGAGCCAGGGGTTGACGACCTGGAACTCGCCAGCAAGAACGCGGCGC 23882 Query 80380 AGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTG 80439 | || | ||| | ||||| || || || ||| ||||| || || ||||| | |||| Sbjct 23881 TGGTAAATGTTGGATGTGTAGGGTTCGAAGCACTCATTGTTGCCCAGAATCTGCGACGTG 23822 Query 80440 CTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCC 80499 || || || ||||| || | || | || ||||| || | || |||| ||| || | | Sbjct 23821 CTGGCTGTAGGCATGGGTGCAACTAGAAGAGAATTGCGTACACCATGCTGCTTAATCTTC 23762 Query 80500 TCGCGCAAATCTGACCAAAAATCAACCCCAA--CGCT----GTGAC--CCCACATGTCGT 80551 || | | | ||| || || || | || || || ||||||| || Sbjct 23761 TCCTTTAGAGAAGTCCAG---TC--CCACAGGTCACTAGGAGTCACATCCCACATATCAA 23707 Query 80552 GCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCT 80611 |||||||||||| | || | ||||| ||| | | || ||| | |||||||||| Sbjct 23706 ACTGCAAGATGCCTTGGGAGACAGGAGAACCCTCATAAGTTGAGTAAGTACCCTCCGTCT 23647 Query 80612 TGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGT 80671 ||| | || || | | || || ||||| || ||| ||||| | ||||| Sbjct 23646 GGGCGATTTCCATTGAAGCAGTTAGTGCGGCGTGGTAGATGGTTTCAAAAATCTGCTTGT 23587 Query 80672 TCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCA 80731 | | ||| || | ||| || || | || || | | ||| ||||||||| Sbjct 23586 TGAGCTGGCGTGCTTCAGGGGATTCAAAAGGCATGCGGAGAGCAAGGAAAGCGTCAGCCA 23527 Query 80732 GGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTT-CGATCGCTCGGCCTCCGGA 80790 ||||||| || |||| | || || ||||||||| |||| | | | | || ||| | Sbjct 23526 GGCCCTGTACACCGACACCAATGGGACGGTGGCGCATGTTGCTGTTG-TGAGCTTCCTGG 23468 Query 80791 ATTGGGTAAAAGTTATT---ATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTA 80847 | ||||| || ||| |||||||| |||||| |||||||| |||||| | || Sbjct 23467 ACAGGGTA---GTGATTCACATCGATGATGCGGTTTAGGTTGCGAACAACAACTTGGGTG 23411 Query 80848 ACATCATGAAGTTTCTGAAAGTCGAATTG------GTTCCCCTTCACAAATGCCGGAAGG 80901 || || || || || | |||||| | | ||| | ||| || | |||||| Sbjct 23410 ACTTCGTGTAGCTTTTTAAAGTCATACTCACCCTTGTTGTAGTCCACGAAGGAAGGAAGG 23351 Query 80902 CTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAG---CATCTGTAAACTCGACGATT 80958 || || || || |||||||| || ||||| |||| || | ||| ||||| || Sbjct 23350 GCTAGAGATGCTAGGTTGCACACAGCGACCTCATCAGGGGCA-CAGTA--CTCGATAATC 23294 Query 80959 TCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTG 81018 || ||||||| || ||| ||| ||||| || |||||||| || |||| |||| Sbjct 23293 TCAGTGCACAGGTTCGAACTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTG 23234 Query 81019 CAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCG 81078 || ||| |||||| ||| | ||| | || ||||| ||| | || || ||||| Sbjct 23233 CAGTGGTCTTTGTAGAGCATAAAAGGGTTGCCAGTCTCAGTCTGAGCCTCCAGAATGGCA 23174 Query 81079 TCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCG 81138 | ||| | | | |||||||| ||| |||| || || | | ||||| | Sbjct 23173 TACCACAGTTTCTGGGCCTTGACAACCATGCGACCGCGACCCTCCTTCTCGTACTTTTCA 23114 Query 81139 TAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCAC 81198 || | || |||| | || | || | | | | ||||| || || |||||| Sbjct 23113 TACAGAGCCTCAAACTCTTCGCCATAGCAATCCGCCAAGCCGGGGCATTCATTGGGGCAC 23054 Query 81199 ATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGG 81258 || || |||||| | ||||| ||| ||||||||| ||| |||||| ||| Sbjct 23053 ATGAGAGTCCAGTCCTCATTCTTCTCAACACGCTTCATGAACAAGTCGCAGATCCACAGG 22994 Query 81259 GCGGTGAACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAG 81317 || ||| ||||| || ||| || | || || | || ||||| ||| || ||||| Sbjct 22993 GCCAAGAATAGGTCACGAGCA-CGGACTTCTTCCTTTCCGTGGTTCTTGCGTAAGTCGAG 22935 Query 81318 AAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCGACG 81377 || || | || || |||||||||||||| ||||| | ||| | | || || Sbjct 22934 GAACTCGAAGACATCAGCATGCCATGGCTCGAGATAAATGGCAAAGGCTCCAGGTCGCTT 22875 Query 81378 G---CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGAT 81434 | |||||||||| || |||||||| || ||| || ||||| | ||| || | ||| Sbjct 22874 GTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGTAGCATGGGAACGAT 22815 Query 81435 ACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCG--CACCTTGCTG 81492 || | || |||||| || || | || || || |||| || || || Sbjct 22814 GCCGTTCGAAGTACCGTTAGTGCCAGCAATGTAAGAGCCAGTGGCACGAATACGGTGAAC 22755 Query 81493 ATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCA 81552 |||| |||||||| ||||| | | ||| |||||| ||||| || | ||| || Sbjct 22754 ATTG--AGACCGATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCG 22697 Query 81553 TAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGG 81612 ||||| ||||||||||| || | |||||||| | | |||||| |||| |||| | Sbjct 22696 TAAATGCCCTCGATGCTGTCATCCTTCATGTCGACTAGGAAACATGAAGACAACTGA--G 22639 Query 81613 CTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACA 81670 | | ||| |||||||| || || || || | |||||| |||| | | | |||| Sbjct 22638 CCTGGGGAGTACCGGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAGACA 22579 Query 81671 TCAGGTCATAGGTTTCCTTGACGCG-TGGAATATCGTCACCGTGAATACCGATAGCTACA 81729 | |||| |||||||| || || | || | | |||||| |||||| | ||| ||| Sbjct 22578 TAAGGTTGTAGGTTTCAAGCACACGATCGACT-TTGTCACCCCAAATACCCACAGCAACA 22520 Query 81730 CGCATAAACATGTACTGGGG 81749 ||||| | ||||| |||||| Sbjct 22519 CGCATTATCATGTGCTGGGG 22500 >seq249 Length=99862 Score = 181 bits (200), Expect = 1e-40 Identities = 178/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| | || |||||||| ||||| || || || ||||| | Sbjct 88355 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATTACCCTCGAAGTCGAGTCCTCT 88296 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | ||| | || || ||||| |||||||| || ||||| |||||| Sbjct 88295 GATACCATTGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCTCCGGACCAG 88236 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| || ||||||| || ||||| | ||||| || Sbjct 88235 CAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAAC 88176 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| || |||||||| | || ||||||| || ||||| || Sbjct 88175 ATCCAGAAGGAGTCTACTCTTCACTTGGTTCTGCGTCTGCGTGGTGGCCA 88126 Score = 167 bits (184), Expect = 3e-36 Identities = 167/217 (77%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 27416 TTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTG 27475 |||||||||| |||||||| ||||| ||||| || || || ||||| || | ||||| Sbjct 88573 TTGTCAAGACCCTTACCGGAAAGACCATTACCCTCGAAGTCGAGTCCTCCGACACCATTG 88514 Query 27476 CAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAA 27535 || | ||| | || || |||||||||||||| |||||||| |||||||||||||| | Sbjct 88513 ACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAGCAGCGTCTCA 88454 Query 27536 TTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGG 27595 | || || || ||||| || ||||||| || ||||| | ||||| || | || || | Sbjct 88453 TCTTCGCCGGAAAGCAGCTTGAGGATGGCCGCACCCTTTCCGACTACAACATTCAGAAAG 88394 Query 27596 AATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| | ||| ||||||| || ||||| Sbjct 88393 AATCTACTCTTCACTTGGTCCTGCGTCTGCGTGGTGG 88357 Score = 145 bits (160), Expect = 9e-30 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || |||||||| || || || ||||| ||||| |||| |||| || | ||| || Sbjct 88843 ACTGGCAAGACCATCACCCTCGAGGTGGAGTCCTCGGATACTATTGACAACGTTAAGTCT 88784 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| || ||||| |||||||||||||| || || ||||| ||| Sbjct 88783 AAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAGCAGCGTCTCATCTTCGCTGGAAAG 88724 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || || ||||||| || ||||| | ||||| || | || ||||| || ||||| ||| Sbjct 88723 CAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCTACTCTCCAT 88664 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| | || || || ||||| Sbjct 88663 CTAGTGCTCCGCCTGCGTGGTGG 88641 >seq753 Length=27693 Score = 145 bits (160), Expect = 9e-30 Identities = 146/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| ||||| || ||||| ||||| || ||||||||||| Sbjct 10930 ATGCAGATTTTCGTCAAGACCCTTACGGGTAAGACGATTACCCTCGAGGTTGAGTCCTCG 10871 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||| | || ||||||||||||||||| ||||| || |||||| Sbjct 10870 GACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAG 10811 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||| ||||| || ||||||| |||||||| | ||||| || Sbjct 10810 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGTACCCTGTCTGACTACAAC 10751 Query 27586 GTCCAAAAGG 27595 | || |||| Sbjct 10750 ATTCAGAAGG 10741 >seq330 Length=314808 Score = 145 bits (160), Expect = 9e-30 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || |||||||| || || || ||||| ||||| || ||||| ||||| || | || Sbjct 237026 TTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCTTCGGACACGATC 237085 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | || | ||| | || || |||||||||||||| ||||| || ||||||||||| | Sbjct 237086 GACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCTTG 237145 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || |||||||||||||| || ||||||| || || || | ||||| || |||| ||| Sbjct 237146 ATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAG 237205 Query 27595 GAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || ||||| || || || ||| |||| || || ||||| Sbjct 237206 GAGTCCACCCTCCACCTTGTCCTGCGCCTGCGTGGTGG 237243 >seq54 Length=183442 Score = 87.8 bits (96), Expect = 2e-12 Identities = 169/247 (68%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 31983 GGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCT-GT 32041 ||| ||| | |||||| ||||| ||||| || ||||| ||| ||| || ||| | || Sbjct 110345 GGATGGCTTTAAGCCTGGTCAGCGGAAGGTCATTTACGCGTGCTTCAGCAAAAACATTGT 110404 Query 32042 CGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACC 32101 | || || |||||||| | ||||| | || | || | | || || |||| || | Sbjct 110405 CCAG-GATATGAAGGTTGTTGAGCTGGCTGGTTTTGTTTCTGGACATACCTCCTACCAAC 110463 Query 32102 ACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAA 32161 |||| || || || || || |||||| | || |||||| ||||||||||| | | Sbjct 110464 ACGGAGAAGCATCCCTACAACAAACCATTATTGGTCTGGCTCAGGACTTTGTCGGTTCCA 110523 Query 32162 ATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGG 32221 | ||| | |||| || ||||| ||| | || || | || || || ||||| || Sbjct 110524 ACAACATAAACTGTCTGGAGCCCAGTGGTAACTTCGGTTCGCGTCTTGCTGGTGGTTCGG 110583 Query 32222 ATGCTGC 32228 ||||||| Sbjct 110584 ATGCTGC 110590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570303563404080