Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016- 01-13] 959 sequences; 30,717,923 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq598 221 2e-52 >seq598 Length=260485 Score = 221 bits (244), Expect = 2e-52 Identities = 1185/1867 (63%), Gaps = 51/1867 (3%) Strand=Plus/Minus Query 76812 GTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTT 76871 ||||| | |||||||| || || || ||||| || |||| || || |||||||| Sbjct 24226 GTACGCAAGTAGTACATGCCCGTCTTGAGACCTAGTTTCCAGCCAGCAAAGTGCATGCTG 24167 Query 76872 GTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATG 76931 || | ||| | ||||| || ||||| || | ||||| ||| || ||| Sbjct 24166 GTGATCTTGCCCATGGTGGGATCTTTCATGTGAATGTTTAGAGACTGCGATTGGTCAATG 24107 Query 76932 AAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTT 76991 ||||| || | |||||| ||||||| | || || || | ||| ||||||| || Sbjct 24106 AAAGCACCACGATCAGCAGCCATTTGCACAACTGTACGCTGGGAAATCTCCCAAACGGTC 24047 Query 76992 TTGAAAACTTGTTTGATATCATCTGGAAGGTTTG---TATTTTGAATGGAACCACCATCT 77048 ||| | | ||| |||||| | |||| | | | | || |||||||| ||| || Sbjct 24046 TTGTACAGAGCTTTAATATCAGCAGGAATGCTAGAGATGTTCTGAATGGAGCCATTGTCC 23987 Query 77049 GATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGG 77108 | ||||| |||||| |||| ||| ||| || || || | | ||| Sbjct 23986 GCAATAATGCGATTCTTCATATTGTCAGACCATAAACCAAGATCGACTAGGTCACGTAGG 23927 Query 77109 AGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTG 77168 || || || || | || || || |||| | || | || |||||| || Sbjct 23926 AGCCAGGGGTTGACGACCTGGAACTCGCCAGCAAGAACGCGGCGCTGGTAAATGTTGGAT 23867 Query 77169 GTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATA 77228 || || ||||| | | |||||||| |||| ||| || | || || || ||||| Sbjct 23866 GTGTAGGGTTCGAAGCACTCATTGTTGCCCAGAATCTGCGACGTGCTGGCTGTAGGCATG 23807 Query 77229 GGTGCCACCAATAAACTATTTCTGAGACCATG-TGTTCTGATTTTATCTTTTAGATATTT 77287 ||||| || | | | ||| | | |||||| || | | || || || |||||| | | Sbjct 23806 GGTGCAACTAGAAGAGAATTGCGTACACCATGCTGCT-TAATCTTCTCCTTTAGAGAAGT 23748 Query 77288 CCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACT 77347 ||| ||||| || || ||| |||||||| | ||| | || | || || || Sbjct 23747 CCAGTCCCACAGGTCACTAGGAGTCACATCCCACATATCAAACTGCAAGATGCC-TTGGG 23689 Query 77348 AG-CATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACA---AC 77403 || || || || | ||| ||| |||| || || || | || | ||| || | Sbjct 23688 AGACAGGAGAACCCTCATAAGTTGAGTAAGTACCCTCCGTCTGGGCGATTTC-CATTGAA 23630 Query 77404 TCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTT 77463 | || | ||| ||| || || ||||| ||||||| ||| ||||| | |||||| Sbjct 23629 GCAGTT--AGTGCGGCGTGGTAGATGGTTTCAAAAATCTGCTTGTTGAGCTGGCGTGCTT 23572 Query 77464 CAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAA 77523 || ||||| || | | | || || || || || | ||||| || || | Sbjct 23571 CAGGGGATTCAAAAGGCATGCGGAGAGCAAGGAAAGCGTCAGCCAGGCCCTGTACACCGA 23512 Query 77524 TACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAA 77583 |||||| || | || | | | ||| | | |||||| | | ||| || | ||| | Sbjct 23511 CACCAATGGGACGGTGGCGCATGTTGCTGTTGTGAGCTTCCTGGACAGGGTAGTGATTCA 23452 Query 77584 TGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAA 77643 || || || || || || | |||||| |||| || || | ||| || || Sbjct 23451 CATCGATGATGCGGTTTAGGTTGCGAACAACAACTTGGGTGACTTCGTGTAGCTTTTTAA 23392 Query 77644 AATCAAA-TCTTCCATCTATAA---CAAACATGTTCAAAG--CTATAGATGCTAGATTAC 77697 | ||| | || || | | | || | | ||| ||| ||||||||| || | Sbjct 23391 AGTCATACTCACCCTTGTTGTAGTCCACGAAGGAAGGAAGGGCTAGAGATGCTAGGTTGC 23332 Query 77698 AAACTGCTACCTCATTAGCGTTGGCA---TATTGTATTATCTCGGTACATAGATTACTAC 77754 | || || ||||||| || | ||| || | || ||||| || || || || || Sbjct 23331 ACACAGCGACCTCATCAGGG---GCACAGTACTCGATAATCTCAGTGCACAGGTTCGAAC 23275 Query 77755 ATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAA 77814 || || || ||||||| || |||||||| ||||| ||| || || || | Sbjct 23274 TGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTGCAGTGGTCTTTGTAGAGCA 23215 Query 77815 TAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTT 77874 |||| || | || || ||| |||| | || | ||| | | ||| | | ||| | Sbjct 23214 TAAAAGGGTTGCCAGTCTCAGTCTGAGCCTCCAGAATGGCATACCACA-GTTTCTGGGCC 23156 Query 77875 TTATCATAGATTTGTATCGCCTCTCTCTTTCA--TA--TTGAGTATATAGCCGTTCAAAT 77930 || || || | | ||| | ||| ||| || || || | |||| ||||| Sbjct 23155 TTGACAACCATGCG-ACCGCGACCCTCCTTCTCGTACTTTTCATACAGAGCC--TCAAAC 23099 Query 77931 TCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCA 77990 || || || | ||| |||| || ||||||||||| |||||||| | | |||||| Sbjct 23098 TCTTCGCCATAGCAATCCGCCAAGCCGGGGCATTCATTGGGGCACATGAGAGTCCAGTCC 23039 Query 77991 CCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCT 78050 ||| | || ||| || ||||| || | || ||||| || || | ||||| || Sbjct 23038 TCATTCTTCTCAACACGCTTCATGAACAAGTCGCAGATCCACAGGGCCAAGAATAGGTCA 22979 Query 78051 CGGGTTCTATGTTCTTCATTTCCTGTATTCTT-TTTAAGATCGAGAAACTCCATAATATC 78109 || | | |||||| ||||| ||||| |||| ||||| ||||| | | ||| Sbjct 22978 CGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAAG-TCGAGGAACTCGAAGACATC 22920 Query 78110 AGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATC 78169 || ||||||||| || ||||| || || | |||||||||| || || || ||||| || Sbjct 22919 AGCATGCCATGGCTCGAGATAAATGGCAAAGGCTCCAGGTCGCTTGTTTCCACCCTGGTC 22860 Query 78170 TATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCC 78229 | ||| | ||||||||| || |||| | | ||| |||| || ||||| || || || Sbjct 22859 AACATAACGGGCGGTGTTGTTGAAAACACGTAGCATGGGAACGATGCCGTTCGAAGTACC 22800 Query 78230 ATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATA--TTACTAATGGATATCCCTATT 78287 || || |||| ||| ||| ||| | || |||||| | || || | || || Sbjct 22799 GTTAGTGCCAGCAATGTAAGAGCCAGTGGCACGAATACGGTGAACATTGAGA--CCGATA 22742 Query 78288 CCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATA 78347 || || |||||||| || || | || ||| || | |||||||| || ||||| || Sbjct 22741 CCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAAATGCCCTCGATG 22682 Query 78348 CTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCA 78407 ||||||||| |||||| | || ||||| ||||| ||| || ||| || ||| Sbjct 22681 CTGTCATCCTTCATGTCGACTAGGAAACATGAAGACAACTGAGCCTGGGGAGTACCGGCA 22622 Query 78408 TTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCA 78467 ||||| | || || ||||| || || || | || ||| | || ||||| |||||| Sbjct 22621 TTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAGACATAAGGTTGTAGGTTTCA 22562 Query 78468 A-TAGCTGAT--TCTATGT---CCCATTGATGAATTCCTACCGCTACACGCATCAACATA 78521 | | ||| || ||| |||| ||| || || || |||||||| | ||| Sbjct 22561 AGCACACGATCGACTTTGTCACCCCA------AATACCCACAGCAACACGCATTATCATG 22508 Query 78522 TGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTT 78581 ||||| || | ||||| ||||| || | ||| | | ||| || || | || Sbjct 22507 TGCTGGGGACGCTCAACAATCTTACCATCAAGTTTGAGTAGGTACGAACGCTCGAGCGTC 22448 Query 78582 TTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTA 78641 ||||| ||||| || | ||| ||||| | ||||| | ||| |||| | || | | Sbjct 22447 TTAAAGCCAAAGTACTGGTAGTTGAAGTCACGGTCGTACACAATGGCAGAGTCCAGCTCA 22388 Query 78642 TCTTTGT 78648 || |||| Sbjct 22387 TCCTTGT 22381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694660472657760