Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016-
01-13] 959 sequences; 30,717,923 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq249 147 5e-30
seq753 127 5e-24
seq330 123 6e-23
>seq249
Length=99862
Score = 147 bits (162), Expect = 5e-30
Identities = 151/196 (77%), Gaps = 1/196 (1%)
Strand=Plus/Minus
Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992
|| || || || || ||||| || || |||||||| || || ||| |||||||| ||
Sbjct 88571 GTCAAGACCCTTACCGGAAAGACCATTACCCTCGAAGTCGAGTCCTCCGACACCATTGAC 88512
Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052
|||||||| ||||| |||||||| || || || |||||||||||||| || || |||
Sbjct 88511 AACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAGCAGCGTCTCATC 88452
Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112
||||||||||| ||||| || ||||| | || ||| |||| || ||| | || ||||||
Sbjct 88451 TTCGCCGGAAAGCAGCTTGAGGATGGCCGCACCCTTTCCGACTACAACATTCAGAAAGAA 88392
Query 178113 TCAACACTGCATCTTG 178128
|| || || || ||||
Sbjct 88391 TCTACTCTTCA-CTTG 88377
Score = 131 bits (144), Expect = 4e-25
Identities = 140/185 (76%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004
|| || || || ||||||||||||||||| ||| || || || || ||||| ||
Sbjct 88843 ACTGGCAAGACCATCACCCTCGAGGTGGAGTCCTCGGATACTATTGACAACGTTAAGTCT 88784
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
||||| |||||||| || || ||||||||||||||||| || || |||||||| |||||
Sbjct 88783 AAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAGCAGCGTCTCATCTTCGCTGGAAAG 88724
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
||||| || ||||| | || || |||| || ||| | || || || || || || |||
Sbjct 88723 CAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCTACTCTCCAT 88664
Query 178125 CTTGT 178129
|| ||
Sbjct 88663 CTAGT 88659
Score = 129 bits (142), Expect = 1e-24
Identities = 154/208 (74%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || || | || || || || || |||||||| || || ||| ||
Sbjct 88352 CAAATCTTCGTCAAGACCTTGACGGGCAAGACCATTACCCTCGAAGTCGAGTCCTCTGAT 88293
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || || ||||| ||||| ||||| || || || |||||||||||||||||
Sbjct 88292 ACCATTGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCTCCGGACCAGCAG 88233
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || |||||||| ||||| ||||| || ||||| | || || |||| || ||| ||
Sbjct 88232 CGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATC 88173
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131
|| || || || || || || |||| ||
Sbjct 88172 CAGAAGGAGTCTACTCTTCA-CTTGGTT 88146
>seq753
Length=27693
Score = 127 bits (140), Expect = 5e-24
Identities = 130/169 (77%), Gaps = 3/169 (2%)
Strand=Plus/Minus
Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969
|||| || |||| | |||||||| || || || || || || ||||| ||||||||||
Sbjct 10938 AGGTCAAGATGC---AGATTTTCGTCAAGACCCTTACGGGTAAGACGATTACCCTCGAGG 10882
Query 177970 TGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCC 178029
| || ||| ||||| ||||| || ||||| |||||||||||||| || || || |
Sbjct 10881 TTGAGTCCTCGGACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTC 10822
Query 178030 CTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078
| ||||||||||| || || |||||||| || || ||||| || |||||
Sbjct 10821 CCCCGGACCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGG 10773
>seq330
Length=314808
Score = 123 bits (136), Expect = 6e-23
Identities = 148/201 (74%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988
|||||| || || || || || || || || ||||| ||||| || || ||||| ||
Sbjct 237025 TTTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCTTCGGACACGAT 237084
Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048
||| |||||||| ||||| |||||||| || || || || ||||||||||| || |
Sbjct 237085 CGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCTT 237144
Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
||||| || || || ||||| || ||||| | ||||| |||| || ||| |||| ||
Sbjct 237145 GATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAA 237204
Query 178109 AGAATCAACACTGCATCTTGT 178129
|| || || || || |||||
Sbjct 237205 GGAGTCCACCCTCCACCTTGT 237225
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203716409529046
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |