Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq85 131 4e-25 seq15 89.7 1e-12 >seq85 Length=66049 Score = 131 bits (144), Expect = 4e-25 Identities = 180/249 (72%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 230386 ATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC 230445 ||||| || || || |||| | || ||||||||| | ||| || | || ||| | Sbjct 3266 ATCATCACCGATGCTGTTGCTATTGAGAAGGAGTTCTTGACTGAGGCCCTGCCCTGTGCC 3325 Query 230446 CTTATTGGCATGAACGCTGAACTTATG-GGACAGTACATCGAATTCGTAGCCGACCGCAT 230504 || ||||||||||||| || || ||| ||| ||||| ||||| || |||||||| | Sbjct 3326 CTGCTTGGCATGAACGCCGACCTCATGAAGAC-CTACATTGAATTTGTCGCCGACCGTCT 3384 Query 230505 TTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGA 230564 | | || || || |||| || || ||||| | | |||||||||| |||||||| Sbjct 3385 CCTGATGGCCCTCGGCAACGACAAGGTCTACAAGGCCAGCAACCCCTTTGACTTTATGGA 3444 Query 230565 GCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAG 230624 | ||| |||||| || ||||||||||||||||| ||||||||| ||||| || | Sbjct 3445 GAACATCTCGCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGCCGACTACCAAAA 3504 Query 230625 GCCTGGTGT 230633 | | ||||| Sbjct 3505 GGCCGGTGT 3513 >seq15 Length=121573 Score = 89.7 bits (98), Expect = 1e-12 Identities = 193/280 (69%), Gaps = 14/280 (5%) Strand=Plus/Minus Query 319392 GGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGG 319451 ||| | |||||| || ||||||| ||| || || |||| ||| ||||| | | | Sbjct 90748 GGGGCACTTCTTGACAAACTCGGCCAGGTTACCACGGTACCGCTTAAGCTTGAAGC---G 90692 Query 319452 TTCGTAATGGATAATAGAGGTG-CAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAA 319510 ||||| |||||||| | | || || || ||| ||||| || |||||||| || |||| Sbjct 90691 CTCGTAGTGGATAAT-GTGCTGGCAGACGTTGTCAAGGAAGCCAGAGTCGTGAGAGACAA 90633 Query 319511 TCACGCACGAAACGTCCTTAAGG--TTGATCAGGTATTCAATCAACCACCTCACGTTAGA 319568 | | | ||| || | || ||| |||||| || || |||| | ||||| Sbjct 90632 TAATG---GAA--GTGCAGGGGGAGTTGCACAGGTAATCCTCCAGCCACTTGACGTTCTT 90578 Query 319569 CACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGC 319628 |||| | ||||||||| ||||||||||||||||| | | | | || | || Sbjct 90577 CACATCCAAATGGTTGGTGGGCTCGTCAAGAAGCAGAATATCGGGAGCCTCGAAGACGGC 90518 Query 319629 ACGTGCA-AGAGCGAGTTTCATTTTCCACCCTCCGGAAAG 319667 ||| ||| ||||| || ||||| ||||| || |||||||| Sbjct 90517 ACG-GCACAGAGCCAGCTTCATCTTCCAACCACCGGAAAG 90479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057806963413910