Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq54 163 3e-35 >seq54 Length=76171 Score = 163 bits (180), Expect = 3e-35 Identities = 461/701 (66%), Gaps = 18/701 (3%) Strand=Plus/Minus Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040 ||||| || |||| || ||||| | | |||||| ||| | | || || ||||| Sbjct 18472 CCAGGGCACTCATTGGGGCACATAAGAGTCCACTCGGCGTTCTTTTCAACACGCTTCATG 18413 Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100 || |||||||| ||||| ||||| | || ||||| | || | ||| || || || Sbjct 18412 AAAAGATCAGGGATCCACAGAGCCAGGAAAAGATCACGGGCACGGACTTCTTCTTTGCCG 18353 Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160 |||||| |||||||||||| | | || ||| | |||||||| || | ||| || Sbjct 18352 TGATTCTTGCGGAGATCGAGGAACTCAAAAACATCCGCGTGCCACGGCTCGAGGTAGATA 18293 Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220 | | | | ||||| || ||||| || ||||| || | ||| | ||| ||||| || | Sbjct 18292 GCAAAAGCACCAGGACGCTTGTTGCCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAAC 18233 Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280 || | || ||| |||| ||||| || || | ||| || || |||| || || ||| Sbjct 18232 ACACGCAGCATAGGAACGATACCGTTCGAGGTACCGTTAGTGCCGGCAATGTAAGAACCA 18173 Query 54281 CTGGCACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATG 54338 |||||||||| | | || || || || || || ||||| || ||||| | | Sbjct 18172 GTGGCACGAATGCGGTGCACGTT--CAGGCCAATACCACCCGCCATCTTGGAGATCATAG 18115 Query 54339 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 54398 |||| ||| | || |||||||| ||||| || || |||||| |||| | | || | Sbjct 18114 CGCAAGTTTTCAGAGTGTCATAGATACCCTCAATGCTGTCATCCTTCATATCCACGAGGA 18055 Query 54399 AACAGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCG 54454 | || ||||| ||| || || ||| || || || || | || || || || Sbjct 18054 AGCACGAAGACAGTTG----CGCCTGGGGAGTACCGGCGTTGAAAAGAGTTGGGGATGCA 17999 Query 54455 TGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC-CCA 54513 || || || | || || | || ||||| ||||| | | || | ||| || Sbjct 17998 TGAGTGAAGAACTTGCTCGACATGAGGTTGTAGGTCTCCAGGACACGTTCAACATCATCA 17939 Query 54514 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 54573 | ||||| || || |||||||| | |||||| ||||| | || ||||||||| Sbjct 17938 CCCCAG-ATTCCAACAGCAACACGCATGATCATGTGTTGAGGACGCTCGACGATCTTGCC 17880 Query 54574 GTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAA 54631 || | ||||| | ||| || || | || || |||||||| || | ||| |||| Sbjct 17879 GTCAAGCTTCAGGAGGTATGAACGCTCAAGCGTCTTGAAACCAAAGTATTGGTAGTTGAA 17820 Query 54632 AAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTT 54672 | || || ||||| | ||| | |||| || | ||||| Sbjct 17819 A--TCACGATCGTACACGATAGCCGAGTCCAGCTCTTCCTT 17781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593712271149360