Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq11 114 2e-20 >seq11 Length=131135 Score = 114 bits (126), Expect = 2e-20 Identities = 347/537 (65%), Gaps = 37/537 (7%) Strand=Plus/Plus Query 145765 GCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATG 145824 || ||||||| |||||||| ||||| ||||| || ||||| ||||| |||| |||||| Sbjct 14718 GCCACCATGTGCGTCAGCAGCGAGTAACTGGCAATATTGAACGGCACACCCAACCCCATA 14777 Query 145825 TCCCCCGAGCGCTGGTACAGCTGGCAGGAGAG------------------CTCCCC---- 145862 || | ||| |||||||||| || || || |||||| Sbjct 14778 TCACACGACCGCTGGTACAATTGACAATGCAGTCTCCCCTTTGCCTTTTCCTCCCCCTTC 14837 Query 145863 ---GCCCGC--------CACGTAGAACTG-GCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 | |||| ||| || ||||| ||| | | || || ||||||| ||||| Sbjct 14838 TTCGTCCGCGGGTAAGACACATAAAACTGCGCAAAC-ATATGACACGGCGGCAACGCCAT 14896 Query 145911 GGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCT 145970 || |||||||| ||||| || | || | || || || | | |||||| | Sbjct 14897 CTTCTTCAAATCCGCCGGATTCCACGCCGATAGTATGATCCGCCGGTCATACGGGTTCGT 14956 Query 145971 C-TTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCT 146029 | || || | | | | ||| ||||| || || ||||||||| |||||| |||| Sbjct 14957 CCTTAATTTGTGC-ACGACCTCCGCCAGCTGATCAACACCCTGCCCCGTGTAATCCGTCT 15015 Query 146030 TGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGT 146089 | || || ||| |||| || ||||| | |||||| || || || || || |||| || Sbjct 15016 GCGCATCAACATACTCGGCGCCAAAGTGACGCCACTGAAAGCCATACACAGGACCCAAGT 15075 Query 146090 CCCCGGGCTCCCTGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGT 146149 | || ||| ||| || || || | | | ||||||| || || || |||||| ||| Sbjct 15076 CGCCAACGGCCCGGTGGCCGAGACCAACGCTGTCGAGGAACTCGCGAGAGCCGTTGCCGT 15135 Query 146150 CCCAGATCTTGACGCCCCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACC 146209 |||| || |||| ||| ||| ||| |||| ||| ||| |||||||| Sbjct 15136 CCCATATTTTGATGCCGGCTGCGCTGAGGGGGAGGGAGGAGGTGCTGCCCTCGATGAACC 15195 Query 146210 AGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGA 146266 |||| || || ||| ||| | | ||||| | |||||||| || ||||||| Sbjct 15196 AGAGGAGTTCGGCGATGACGGCGCGGGTAAAGACACGTTTGGTGGTGAGGAGGGGGA 15252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590067528418280