Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq30 125 6e-24
seq169 118 9e-22
seq59 104 2e-17
>seq30
Length=92847
Score = 125 bits (138), Expect = 6e-24
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
|| |||| ||||| ||| |||||||| || ||||| ||||| |||||||| | ||||
Sbjct 12687 AGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTACGACCGTCT 12628
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|| ||||| || || ||| |||| || | |||||| ||| ||| | ||| ||||||||
Sbjct 12627 TCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCC 12568
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
||||| || || | | | | ||| || || ||| |||| ||||||||||
Sbjct 12567 TGAATCTTGGACTTGACATTGTCAATAGTGTCCGAGGTCTCAACCTCCAGGGTAATGGTC 12508
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
||||| || | || |||||||| ||||||||
Sbjct 12507 TTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 12476
Score = 118 bits (130), Expect = 9e-22
Identities = 146/200 (73%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
|| || | ||||| ||| |||||||| |||||||| ||||| |||||||| | |||||
Sbjct 12459 AGAACGAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCTGCCAGGGTACGACCGTCC 12400
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|||||||| ||||| || |||| || | ||||||||| ||| | ||||||||||||
Sbjct 12399 TCCAGCTGCTTGCCTGCGAAAATCAGGCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCC 12340
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
||||| || || | | | | ||| || || ||| ||| | ||| ||||||
Sbjct 12339 TGAATCTTGGACTTGACATTGTCAATAGTGTCCGAGGACTCGACTTCTAGGGTGATGGTC 12280
Query 21144 TTGCCGGTTAACGTTTTGAC 21163
|| ||||| | || |||||
Sbjct 12279 TTTCCGGTGAGGGTCTTGAC 12260
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || || || | ||| |||| || | ||||||||||| |||||||| ||||||||
Sbjct 12157 CCACCGCGAAGGCGGAGGACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCGCA 12098
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
||||| | |||| || ||||| || || ||| |||| || | |||||| ||| |||
Sbjct 12097 AGGGTGCGACCGTCTTCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGG 12038
Query 21069 ACGCCTTCCTTGTC 21082
| || ||||| ||
Sbjct 12037 ATACCCTCCTTATC 12024
>seq169
Length=45351
Score = 118 bits (130), Expect = 9e-22
Identities = 157/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | ||| |||| || | ||||||||||| || ||||| |||||||||
Sbjct 32216 CCACCACGCAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCC 32275
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
||||| || | ||||| ||||| ||||| ||| | || || | |||||||||| |||
Sbjct 32276 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGG 32335
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| || |||||||| |||||| || || | | ||| || || || |||
Sbjct 32336 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAGGACTCGACC 32395
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAA 21166
|||| |||||||||||| || || | || ||||| ||
Sbjct 32396 TCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 32433
>seq59
Length=73848
Score = 104 bits (114), Expect = 2e-17
Identities = 140/195 (72%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 20986 CCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAA 21045
|||| || || || |||||||||||||| || | ||||||||||| ||||| ||| | |
Sbjct 15444 CCTTCTGGATATTGTAGTCCGCCAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCAAAGA 15503
Query 21046 TAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGC 21105
| || | |||||||||| || | ||| |||||||| |||||| || || | |
Sbjct 15504 TCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 15563
Query 21106 CGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAA 21165
||| || || || ||| || | |||||| ||||| || |||| || ||||| |
Sbjct 15564 CGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTTAGGGTCTTGACGA 15623
Query 21166 ATATTTGCATTTTGA 21180
| || ||||| ||||
Sbjct 15624 AAATCTGCATCTTGA 15638
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422252731121012
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |