Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq85 297 2e-75
seq30 125 7e-24
seq169 122 9e-23
>seq85
Length=66049
Score = 297 bits (328), Expect = 2e-75
Identities = 593/869 (68%), Gaps = 16/869 (2%)
Strand=Plus/Plus
Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635
|| || || |||| |||||||| ||| |||||| | |||||||| | |||| ||
Sbjct 2597 GAACCCCTTCTGCAGGAGAACCCTAACCGCTTCGTGCTCTTCCCCATCAAGTACCACGAG 2656
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||||||||| || |||||||||| ||||||| | || |||
Sbjct 2657 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCCGAGGAGATTGATCTG 2716
Query 116696 TCCAAGGA-CACGAGCGACTGG---GAGCGCTTGAACGACAACGAGCGCCATTTCATCAA 116751
|||||||| | | | ||||||| | ||| ||||| | |||||| || |||
Sbjct 2717 TCCAAGGATCTCCA-CGACTGGAACAACCGCATGAACAAAGACGAGCAGTTCTTTATCTC 2775
Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811
||| | ||||| || || |||||| ||||| |||||||||||||| |||| |||||
Sbjct 2776 CCACATCCTGGCTTTCTTTGCCGCCTCTGACGGTATCGTCAACGAGAACTTGGTTGAGCG 2835
Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871
|||| | ||||| ||| | ||||||| || ||||| || || || |||||| ||
Sbjct 2836 TTTCTCCGCCGAGGTCCAGATTCCCGAGGCCCGCTGCTTTTATGGTTTCCAGATCATGAT 2895
Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTT 116927
||| ||| | ||||| || | || ||| ||||| || || ||| | | || |
Sbjct 2896 GGAAAACATTCACTCCGAGACCTACTCGCTGCTCATTGATACCTACATCAAGGAGCCCGC 2955
Query 116928 CGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987
| | | || | |||| |||||||| || || || || ||| | ||||
Sbjct 2956 C--CAGCGTTCCTAC--CTGTTCAACGCCATTGATACTATTCCCTGCATTCGCCGCAAGG 3011
Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGG 117047
| || ||||| ||| |||||||||| || ||| | |||| | | |||| || || |
Sbjct 3012 CTGACTGGGCCCTGAAGTGGATCGCCGACAAGGAGTCTACCTTTGCCCAGCGTCTCGTTG 3071
Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107
|||| || || |||||||| ||||||| ||||| ||| ||| |||| || |||||
Sbjct 3072 CCTTTGCCGCTGTCGAGGGTATCTTCTTCTCGGGTGCTTTTGCCTCCATCTTCTGGCTGC 3131
Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167
|| || || |||||||| || ||||| ||| ||||||||| |||||| | || ||||
Sbjct 3132 GCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTGATCTCCCGTGATGAGG 3191
Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGG 117227
| || || |||||||| || |||| | | || | | || || ||| |
Sbjct 3192 GCCTTCACACTGACTTTGCTTGCCTGCTCTACTCCCACCTTAACAACCGCCCCAGCAAGC 3251
Query 117228 CGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAG 117287
| | ||| ||| ||||||| || || || || ||| || ||| | || || |
Sbjct 3252 AACTGATTGAGGACATCATCACCGATGCTGTTGCTATTGAGAAGGAGTTCTTGACTGAGG 3311
Query 117288 CGCTG-CCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTC 117346
| ||| || |||| ||||| || | || ||| ||| | ||||| || ||
Sbjct 3312 CCCTGCCCTGTGC-CCTGCTTGGCATGAACGCCGACCTCATGAAGACCTACATTGAATTT 3370
Query 117347 GTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCG 117406
||||||||| | || ||| | | || | | || |||| |||||| | ||||||
Sbjct 3371 GTCGCCGACCGTCTCCTGATGGCCCTCGGCAACGACAAGGTCTACAAGGCCAGCAACCCC 3430
Query 117407 CTGGACTTTATGAACCTCATCTC-CTTGG 117434
| ||||||||| | |||||| |||||
Sbjct 3431 TTTGACTTTATGGAGAACATCTCGCTTGG 3459
>seq30
Length=92847
Score = 125 bits (138), Expect = 7e-24
Identities = 147/199 (74%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759
|||| || || ||||| || || ||||||||| | || ||||| || | |||| |
Sbjct 12258 TCGTCAAGACCCTCACCGGAAAGACCATCACCCTAGAAGTCGAGTCCTCGGACACTATTG 12317
Query 40760 AAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCA 40819
| | ||||| || |||| ||||| || ||||||||| | |||||||| || || |
Sbjct 12318 ACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGCATCCCCCCTGACCAGCAGCGCCTGA 12377
Query 40820 TCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879
| | ||| ||||| |||||||| |||| || ||||| ||||||||||| |||||||
Sbjct 12378 TTTTCGCAGGCAAGCAGCTGGAGGACGGTCGTACCCTGGCAGACTACAACATTCAGAAGG 12437
Query 40880 AGGCCACGCTGCATCTAGT 40898
|| | || |||||||| ||
Sbjct 12438 AGTCTACTCTGCATCTCGT 12456
Score = 125 bits (138), Expect = 7e-24
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| || || || || || || ||||| ||||| ||| | || || || || |
Sbjct 12476 ATGCAAATCTTTGTCAAGACTCTGACTGGCAAGACCATTACCCTGGAGGTTGAGACCTCG 12535
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | ||||| || |||| ||||| |||||||||||| |||| |||
Sbjct 12536 GACACTATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCGGATCAG 12595
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || ||||| | || || || ||||| || |||| || ||||| |||||||||
Sbjct 12596 CAGCGTCTCATTTTTGCTGGAAAGCAGCTTGAAGACGGTCGTACCCTGGCAGACTACAAC 12655
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|||||||||||| | || |||||||| ||
Sbjct 12656 ATCCAGAAGGAGTCTACTCTGCATCTGGT 12684
Score = 111 bits (122), Expect = 2e-19
Identities = 139/188 (74%), Gaps = 2/188 (1%)
Strand=Plus/Plus
Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770
|||| ||||| ||||||||| |||| || ||| | | |||| | | | |||| ||||
Sbjct 11953 TCACTGGCAAGACCATCACCCTCGAGGTTGAATCGTCAGACACCATCGACAACG-TCAAA 12011
Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830
|| |||| || || ||||| |||||| |||| ||||| || ||||| | || ||
Sbjct 12012 TCCAAGATTCAAGATAAGGAGGGTATCCCCCCGGATCAGCAGCGTCTCATTTTTGCTGGA 12071
Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890
|| ||||| || |||| |||||||| ||||||||||| ||||||||| |||| ||
Sbjct 12072 AAGCAGCTTGAAGACGGTCGCACCCTTGCGGACTACAACATTCAGAAGGAGTCCACCCTT 12131
Query 40891 CATCTAGT 40898
|| || ||
Sbjct 12132 CACCTGGT 12139
>seq169
Length=45351
Score = 122 bits (134), Expect = 9e-23
Identities = 149/201 (74%), Gaps = 2/201 (1%)
Strand=Plus/Minus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || || ||||| || ||||| ||| | || ||||| || | |||| |
Sbjct 32433 TTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCCTCGGACACGATC 32374
Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817
| |||| ||||| || || | ||||| ||||| |||||| |||||||||| || ||
Sbjct 32373 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGCCT 32315
Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877
|||| || ||||| ||||| || || | |||||||| |||||||||||||||||
Sbjct 32314 GATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCGGACTACAACATCCAGAA 32255
Query 40878 GGAGGCCACGCTGCATCTAGT 40898
|||| |||| || || || ||
Sbjct 32254 GGAGTCCACCCTCCACCTGGT 32234
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515211104618320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |