Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq85 297 2e-75 seq30 125 7e-24 seq169 122 9e-23 >seq85 Length=66049 Score = 297 bits (328), Expect = 2e-75 Identities = 593/869 (68%), Gaps = 16/869 (2%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || || || |||| |||||||| ||| |||||| | |||||||| | |||| || Sbjct 2597 GAACCCCTTCTGCAGGAGAACCCTAACCGCTTCGTGCTCTTCCCCATCAAGTACCACGAG 2656 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||||| ||||||| | || ||| Sbjct 2657 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCCGAGGAGATTGATCTG 2716 Query 116696 TCCAAGGA-CACGAGCGACTGG---GAGCGCTTGAACGACAACGAGCGCCATTTCATCAA 116751 |||||||| | | | ||||||| | ||| ||||| | |||||| || ||| Sbjct 2717 TCCAAGGATCTCCA-CGACTGGAACAACCGCATGAACAAAGACGAGCAGTTCTTTATCTC 2775 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||| | ||||| || || |||||| ||||| |||||||||||||| |||| ||||| Sbjct 2776 CCACATCCTGGCTTTCTTTGCCGCCTCTGACGGTATCGTCAACGAGAACTTGGTTGAGCG 2835 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 |||| | ||||| ||| | ||||||| || ||||| || || || |||||| || Sbjct 2836 TTTCTCCGCCGAGGTCCAGATTCCCGAGGCCCGCTGCTTTTATGGTTTCCAGATCATGAT 2895 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTT 116927 ||| ||| | ||||| || | || ||| ||||| || || ||| | | || | Sbjct 2896 GGAAAACATTCACTCCGAGACCTACTCGCTGCTCATTGATACCTACATCAAGGAGCCCGC 2955 Query 116928 CGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987 | | | || | |||| |||||||| || || || || ||| | |||| Sbjct 2956 C--CAGCGTTCCTAC--CTGTTCAACGCCATTGATACTATTCCCTGCATTCGCCGCAAGG 3011 Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGG 117047 | || ||||| ||| |||||||||| || ||| | |||| | | |||| || || | Sbjct 3012 CTGACTGGGCCCTGAAGTGGATCGCCGACAAGGAGTCTACCTTTGCCCAGCGTCTCGTTG 3071 Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107 |||| || || |||||||| ||||||| ||||| ||| ||| |||| || ||||| Sbjct 3072 CCTTTGCCGCTGTCGAGGGTATCTTCTTCTCGGGTGCTTTTGCCTCCATCTTCTGGCTGC 3131 Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 || || || |||||||| || ||||| ||| ||||||||| |||||| | || |||| Sbjct 3132 GCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTGATCTCCCGTGATGAGG 3191 Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGG 117227 | || || |||||||| || |||| | | || | | || || ||| | Sbjct 3192 GCCTTCACACTGACTTTGCTTGCCTGCTCTACTCCCACCTTAACAACCGCCCCAGCAAGC 3251 Query 117228 CGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAG 117287 | | ||| ||| ||||||| || || || || ||| || ||| | || || | Sbjct 3252 AACTGATTGAGGACATCATCACCGATGCTGTTGCTATTGAGAAGGAGTTCTTGACTGAGG 3311 Query 117288 CGCTG-CCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTC 117346 | ||| || |||| ||||| || | || ||| ||| | ||||| || || Sbjct 3312 CCCTGCCCTGTGC-CCTGCTTGGCATGAACGCCGACCTCATGAAGACCTACATTGAATTT 3370 Query 117347 GTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCG 117406 ||||||||| | || ||| | | || | | || |||| |||||| | |||||| Sbjct 3371 GTCGCCGACCGTCTCCTGATGGCCCTCGGCAACGACAAGGTCTACAAGGCCAGCAACCCC 3430 Query 117407 CTGGACTTTATGAACCTCATCTC-CTTGG 117434 | ||||||||| | |||||| ||||| Sbjct 3431 TTTGACTTTATGGAGAACATCTCGCTTGG 3459 >seq30 Length=92847 Score = 125 bits (138), Expect = 7e-24 Identities = 147/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || || ||||| || || ||||||||| | || ||||| || | |||| | Sbjct 12258 TCGTCAAGACCCTCACCGGAAAGACCATCACCCTAGAAGTCGAGTCCTCGGACACTATTG 12317 Query 40760 AAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCA 40819 | | ||||| || |||| ||||| || ||||||||| | |||||||| || || | Sbjct 12318 ACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGCATCCCCCCTGACCAGCAGCGCCTGA 12377 Query 40820 TCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 | | ||| ||||| |||||||| |||| || ||||| ||||||||||| ||||||| Sbjct 12378 TTTTCGCAGGCAAGCAGCTGGAGGACGGTCGTACCCTGGCAGACTACAACATTCAGAAGG 12437 Query 40880 AGGCCACGCTGCATCTAGT 40898 || | || |||||||| || Sbjct 12438 AGTCTACTCTGCATCTCGT 12456 Score = 125 bits (138), Expect = 7e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || || ||||| ||||| ||| | || || || || | Sbjct 12476 ATGCAAATCTTTGTCAAGACTCTGACTGGCAAGACCATTACCCTGGAGGTTGAGACCTCG 12535 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | ||||| || |||| ||||| |||||||||||| |||| ||| Sbjct 12536 GACACTATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCGGATCAG 12595 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||| | || || || ||||| || |||| || ||||| ||||||||| Sbjct 12596 CAGCGTCTCATTTTTGCTGGAAAGCAGCTTGAAGACGGTCGTACCCTGGCAGACTACAAC 12655 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || |||||||| || Sbjct 12656 ATCCAGAAGGAGTCTACTCTGCATCTGGT 12684 Score = 111 bits (122), Expect = 2e-19 Identities = 139/188 (74%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770 |||| ||||| ||||||||| |||| || ||| | | |||| | | | |||| |||| Sbjct 11953 TCACTGGCAAGACCATCACCCTCGAGGTTGAATCGTCAGACACCATCGACAACG-TCAAA 12011 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || |||| || || ||||| |||||| |||| ||||| || ||||| | || || Sbjct 12012 TCCAAGATTCAAGATAAGGAGGGTATCCCCCCGGATCAGCAGCGTCTCATTTTTGCTGGA 12071 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || ||||| || |||| |||||||| ||||||||||| ||||||||| |||| || Sbjct 12072 AAGCAGCTTGAAGACGGTCGCACCCTTGCGGACTACAACATTCAGAAGGAGTCCACCCTT 12131 Query 40891 CATCTAGT 40898 || || || Sbjct 12132 CACCTGGT 12139 >seq169 Length=45351 Score = 122 bits (134), Expect = 9e-23 Identities = 149/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || ||||| || ||||| ||| | || ||||| || | |||| | Sbjct 32433 TTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCCTCGGACACGATC 32374 Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817 | |||| ||||| || || | ||||| ||||| |||||| |||||||||| || || Sbjct 32373 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGCCT 32315 Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 |||| || ||||| ||||| || || | |||||||| ||||||||||||||||| Sbjct 32314 GATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCGGACTACAACATCCAGAA 32255 Query 40878 GGAGGCCACGCTGCATCTAGT 40898 |||| |||| || || || || Sbjct 32254 GGAGTCCACCCTCCACCTGGT 32234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515211104618320