Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq30 122 8e-23
seq59 105 6e-18
seq169 102 7e-17
>seq30
Length=92847
Score = 122 bits (134), Expect = 8e-23
Identities = 145/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|||||||| || || |||||||| || || || || || || ||||| ||||||
Sbjct 12672 GTAGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTACGACCGTCTTCAAGCTGCTTTCCA 12613
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
|| | ||||||||||||||||| || || |||||||||||||| ||| || ||
Sbjct 12612 GCAAAAATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTG 12553
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | || | ||||||| | |||| ||||| | ||| | || ||||| ||||||||
Sbjct 12552 ACATTGTCAATAGTGTCCGAGGTCTCAACCTCCAGGGTAATGGTCTTGCCAGTCAGAGTC 12493
Query 118722 TTTACAAAAATCTGCAT 118738
|| ||||| || |||||
Sbjct 12492 TTGACAAAGATTTGCAT 12476
Score = 95.1 bits (104), Expect = 1e-14
Identities = 132/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| ||| | || ||||| || ||||||||||| || | ||||| || ||
Sbjct 12139 ACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCGCAAGGGTGCGACCGTCTTCA 12080
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| |||||||| | ||||||||||||||||| || || || |||||||| ||| |
Sbjct 12079 AGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTATCTTGA 12020
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || ||| || | |||| |||||| | || ||||||| ||| | || |||
Sbjct 12019 ATCTTGGATTTGACGTTGTCGATGGTGTCTGACGATTCAACCTCGAGGGTGATGGTCTTG 11960
Query 118710 CCGGT 118714
|| ||
Sbjct 11959 CCAGT 11955
Score = 82.4 bits (90), Expect = 7e-11
Identities = 129/185 (70%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|||||||| || ||||||||||| || || || || ||||| ||||| || ||
Sbjct 12444 GTAGACTCCTTCTGAATGTTGTAGTCTGCCAGGGTACGACCGTCCTCCAGCTGCTTGCCT 12385
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| | || || |||||||| || || || ||||| |||||||| ||| || ||
Sbjct 12384 GCGAAAATCAGGCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGAATCTTGGACTTG 12325
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | || | ||||||| | |||||| || | ||| | || || ||||| || ||
Sbjct 12324 ACATTGTCAATAGTGTCCGAGGACTCGACTTCTAGGGTGATGGTCTTTCCGGTGAGGGTC 12265
Query 118722 TTTAC 118726
|| ||
Sbjct 12264 TTGAC 12260
>seq59
Length=73848
Score = 105 bits (116), Expect = 6e-18
Identities = 117/156 (75%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642
|||||| ||||| || ||||| |||| || |||||||| || ||||| |||||||||||
Sbjct 15478 ATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTT 15537
Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702
||| || || || || | |||| |||||||| | ||| ||||||| ||| |
Sbjct 15538 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCAACCTCGAGGGTAAT 15597
Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||| || || || || || || || |||||||||||
Sbjct 15598 CGTCTTACCCGTTAGGGTCTTGACGAAAATCTGCAT 15633
>seq169
Length=45351
Score = 102 bits (112), Expect = 7e-17
Identities = 143/201 (71%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| ||||| || ||||| || || |||||||| || || ||||| ||||||
Sbjct 32234 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCA 32293
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || ||||| |||| || |||||||| || || || || |||||||||||
Sbjct 32294 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGG 32353
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| ||||||| | ||||||||| | ||| | || ||
Sbjct 32354 ATCTTGGACTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTA 32413
Query 118710 CCGGTCAGAGTTTTTACAAAA 118730
|| ||||| || || || |||
Sbjct 32414 CCCGTCAGGGTCTTGACGAAA 32434
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433823753853844
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |