Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq30 116 3e-21
seq59 93.3 3e-14
>seq30
Length=92847
Score = 116 bits (128), Expect = 3e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||||| || ||||||||| ||||||||||| ||| ||| |||| ||
Sbjct 12684 ACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTACGACCGTCTTCA 12625
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || ||||| || || || | ||||| || || || || | |||||||||||| |
Sbjct 12624 AGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGA 12565
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | ||||| ||| ||||||| |||||| ||||||
Sbjct 12564 ATCTTGGACTTGACATTGTCAATAGTGTCCGAGGTCTCAACCTCCAGGGTAATGGTCTTG 12505
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| ||||||||||| ||||||||||||||
Sbjct 12504 CCAGTCAGAGTCTTGACAAAGATTTGCAT 12476
>seq59
Length=73848
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/208 (70%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206
||||||| || |||||||| ||| || | || ||||| || || || || || |
Sbjct 15444 CCTTCTGGATATTGTAGTCCGCCAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCAAAGA 15503
Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266
||| ||||| ||||| ||||| | |||||||||||| || || ||| ||
Sbjct 15504 TCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 15563
Query 45267 CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAA 45326
| | | ||||| ||| ||||| | |||||||||||| ||||| || ||||| || |
Sbjct 15564 CGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTTAGGGTCTTGACGA 15623
Query 45327 AGATTTGCATGTTGCCTCAATACACACA 45354
| || ||||| ||| | | | |||||||
Sbjct 15624 AAATCTGCATCTTGAC-CTACACACACA 15650
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395069147571397
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |