Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq54 370 9e-98 seq85 228 7e-55 seq30 109 5e-19 seq59 96.9 3e-15 >seq54 Length=76171 Score = 370 bits (410), Expect = 9e-98 Identities = 1217/1882 (65%), Gaps = 34/1882 (2%) Strand=Plus/Minus Query 22109 TCCACTGTAAACTGTAT-GGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGT 22167 || || || ||||| || |||| || || | || ||| ||||| || |||||||| || Sbjct 19660 TCAACAGTGAACTGGATAGGCGCA-GCAGCGGCTTGGGTACGAAGGTAGTACATGCCAGT 19602 Query 22168 CTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCAA 22227 ||||||||||| |||||| | || || || || | ||| || | || Sbjct 19601 CTTCAGACCCAGCTTCCAACCAGTGAAGTGCATGCTGGTGATTTTACCCATGGTGGGATC 19542 Query 22228 GTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCAT 22287 | ||| | | || | ||| || ||| |||||||| || || ||||| || ||||| Sbjct 19541 CTTCATATGAATGTTCAGCGATTGCGACTGGTCGATAAAGGCACCACGATCAGCAGCCAT 19482 Query 22288 ATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTAA 22347 | | | |||||| || || |||||||| ||||||||||| | |||| || Sbjct 19481 CTGGACAACCGTACGCTGAGAAATCTCCCATACAGTCTTGTACAGACCCTTGATGTCAGC 19422 Query 22348 CGGTATCGATTCGA-TCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCG 22406 || || | | || | | || | || || || | | ||||| || || || | Sbjct 19421 AGGAAT-GCTGGGAATGTTTTGAATTGAACCATTGTCGGCAATGATGCGGTTCTTCATGG 19363 Query 22407 TATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAA 22466 ||| ||||| || | | | || || | ||| |||| || || || | Sbjct 19362 AATCAGACCACAGGCCAAGGTCAACCAGGTCACGCAACAGCCAGGGGTTGACGACCTGGA 19303 Query 22467 ACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCAT 22526 ||||||| | | ||| ||||| |||||||||||||| ||| | || ||||| |||| | Sbjct 19302 ACTCGCCAGCTAGGACACGGCGCTGGTAAATGTTGGAGGTGTAGGGCTCGAAGCATTCGT 19243 Query 22527 TGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTC 22586 | || ||||| ||||| | || ||||| ||||| ||||| | |||| ||||| | Sbjct 19242 TATTGCCCAGAATCTGGGAAGTACTGGCGGTGGGCATGGGCGCAAGTAGTAAAGAGTTGC 19183 Query 22587 TCAAGCCGTGCT--TTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGG 22644 | ||||||| |||| | || || | || | ||||||||| || || || Sbjct 19182 GGATACCGTGCTGCTTGATCTGTTCCT--TCAGTGAGGTCCAGTCCCAGAGGTCACTGGG 19125 Query 22645 CGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTA 22704 || ||||| |||||| || | |||| | ||| | | | || ||| ||||| Sbjct 19124 AGTGACATT---CCACATGTCAAACTGCAGGATGCCCTGGGACACAGGCGAGCCCTCGTA 19068 Query 22705 CGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATA 22764 || |||| || | || |||| ||||| ||||| | || ||| || Sbjct 19067 GGTCGAGTACTTGCCCTCCTTCTGAGCAATCTCGCACGAGGCCTCAAGAGCAGCGTGGTA 19008 Query 22765 TATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGC----GGCGACGCTTTCGTACGGCA 22820 || ||||||||||| | |||| | | | ||| | |||| || | |||| Sbjct 19007 AATGGTCTCGAAGATATGAGTGTTGAGCTGGCGGGCCTCAGCCGAC----TCAAAGGGCA 18952 Query 22821 TACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTT 22880 | |||| || ||| ||||| || | ||||||||| || | |||||| || |||| Sbjct 18951 TGCGCAGAGCCAGGAAGGCGTCGGCAAGACCCTGAACACCGACACCGATGGGACGGTGAC 18892 Query 22881 TCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCA 22940 || || | ||| || | | ||| || || |||||| | | ||||| Sbjct 18891 GCATGTTGCTGTTATATGCTTCAGTAACAGGGTAGTGGTTGACATCGATGATGCGGTTCA 18832 Query 22941 AGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGAT- 22999 ||| | |||| || || | | || ||||| | | | Sbjct 18831 GGTTGCGAACAACAACCTTGGTGACCTCGTGCAGCTTATGGAAATCGTACGAGTT-GTTG 18773 Query 23000 -TGTA--CAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCT 23056 |||| ||| ||| || ||| | || ||||| ||||| || || ||||| || Sbjct 18772 GTGTAGTCAATAAAGGCAGGGAGGGCCAAAGAAGCAAGGTTGCAGACAGCAACCTCATCA 18713 Query 23057 TTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTG 23116 | ||| || | ||| || || || || ||| | || || |||| || Sbjct 18712 GGAGCACAGTATTCAATAATCTCAGTGCACAGGTTGGAGCTGCGGATAGTACCCAGGTTC 18653 Query 23117 CTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCG 23176 ||||||| || || || ||||| |||||||| |||||| |||| | || ||||| Sbjct 18652 TTCTGGTTACTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAACGGGTTACCAGTCTCA 18593 Query 23177 ACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACAC---GTCG--CACGT 23231 ||| | || | ||| || ||||| | || || | | | |||| |||| Sbjct 18592 GTCTGAGCTTCCAGGATAGCATACCACAGCTTTTGGGCTTTGAGAGTCAGTCGACCACGA 18533 Query 23232 ACCTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGG 23291 ||| | || || ||||| | |||||| || || || || | ||||||||||| | Sbjct 18532 CCCTCCTTT-----TCATACTTCTCGTACAATGCCTCGAACTCATCGCCGTAACAGTCAG 18478 Query 23292 CCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTC 23351 |||| || || | | | || ||||| ||| ||||| | || |||||||| || Sbjct 18477 CCAGACCAGGGCACTCATTGGGGCACATAAGAGTCCACTCGGCGTTCTTTTCAACACGCT 18418 Query 23352 TCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTT 23411 |||| |||||||| || ||||| ||||| ||| || || ||||| || || || |||| Sbjct 18417 TCATGAAAAGATCAGGGATCCACAGAGCCAGGAAAAGATCACGGGCACGGACTTCTTCTT 18358 Query 23412 TGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGT 23471 ||||| ||||| | ||| | || || || || ||||| |||||||||||||||| Sbjct 18357 TGCCGTGATTCTTGCGGAGATCGAGGAACTCAAAAACATCCGCGTGCCACGGCTCGAGGT 18298 Query 23472 AAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGT 23531 | | ||||| || || || | ||| ||||| ||||| || |||||||| || ||||||| Sbjct 18297 AGATAGCAAAAGCACCAGGACGCTTGTTGCCACCCTGGTCAACGTAACGAGCAGTGTTGT 18238 Query 23532 TGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCG 23591 || |||| | ||||| || |||| |||||| || | ||| ||| || | | Sbjct 18237 TGAACACACGCAGCATAGGAACGATACCGTTCGAGGTACCGTTAGTGCCGGCAATGTAAG 18178 Query 23592 AACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCA 23651 |||| | || |||| | ||| |||| | || || || || || || || |||| Sbjct 18177 AACCAGTGGCACGAATGCGGTGCACGTTCAGGCCAATACCACCCGCCATCTTGGAGATCA 18118 Query 23652 TCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCA 23711 | ||||| |||||||||||| ||||| ||||| |||||||| || || | | || | Sbjct 18117 TAGCGCAAGTTTTCAGAGTGTCATAGATACCCTCAATGCTGTCATCCTTCATATCCACGA 18058 Query 23712 AGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGT 23771 ||| |||||||||| |||||| | ||| ||| |||| ||| || || ||| || | Sbjct 18057 GGAAGCACGAAGACAGTTGCGCCTGGGGAGTACCGGCGTTGAAAAGAGTTGGGGATGCAT 17998 Query 23772 GCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTC 23831 | || ||| | ||||||| || ||||| || || | | | |||| || || | Sbjct 17997 GAGTGAAGAACTTGCTCGACATGAGGTTGTAGGTCTCCAGGACACGTTCAACATCATCAC 17938 Query 23832 CGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGT 23891 | || || | || || ||||| ||||||| |||||| | |||||| | ||||| Sbjct 17937 CCCAGATTCCAACAGCAACACGCATGATCATGTGTTGAGGACGCTCGACGATCTTGCCGT 17878 Query 23892 TAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGT 23951 || || | || |||||||| | | ||| || || ||||| || | ||||| || | Sbjct 17877 CAAGCTTCAGGAGGTATGAACGCTCAAGCGTCTTGAAACCAAAGTATTGGTAGTTGAAAT 17818 Query 23952 CACGATCGTGCACTATGGCCGA 23973 ||||||||| ||| || ||||| Sbjct 17817 CACGATCGTACACGATAGCCGA 17796 >seq85 Length=66049 Score = 228 bits (252), Expect = 7e-55 Identities = 599/901 (66%), Gaps = 21/901 (2%) Strand=Plus/Plus Query 57505 CCGATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATC 57564 |||| ||||| ||| |||| ||||| || | || || | || || || | || | Sbjct 2592 CCGACGAACCCCTTCTGCAGGAGAACCCTAACCGCTTCGTGCTCTTCCCCATCAAGTACC 2651 Query 57565 CAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAG 57624 || || ||| | |||||||| ||||| || || || || ||||||| ||| || | | Sbjct 2652 ACGAGATCTGGCAAATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCCGAGGAGATTG 2711 Query 57625 ACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCA--AAGAATCTGA-GAGAAATT--T 57679 | ||||| |||||||| ||| ||| | || || || || || ||| | || | Sbjct 2712 ATCTGTCCAAGGATCTCCACGACTGGAACAACCGCATGAACAAA--GACGAGCAGTTCTT 2769 Query 57680 TATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGT 57739 ||| ||| | |||| || || ||||| || || ||||| || |||||||| ||||| Sbjct 2770 TATCTCCCACATCCTGGCTTTCTTTGCCGCCTCTGACGGTATCGTCAACGAGAACTTGGT 2829 Query 57740 CGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGT 57799 || | || || || || || | | ||||| | |||||||| || || || | Sbjct 2830 TGAGCGTTTCTCCGCCGAGGTCCAGATTCCCGAGGCCCGCTGCTTTTATGGTTTCCAGAT 2889 Query 57800 GGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859 || |||||| | || || || | || ||||| ||||| ||||| ||| | ||||| Sbjct 2890 CATGATGGAAAACATTCACTCCGAGACCTACTCGCTGCTCATTGATACCTACATCAAGGA 2949 Query 57860 CAACGACGAGAAA-CGTAGACTGTTCAACGCGATCGAAACAATGCCC-GCGATCGCCAAG 57917 || | || | || ||||||||||| || || || || ||| || ||||| Sbjct 2950 GCCCGCCCAGCGTTCCTAC-CTGTTCAACGCCATTGATACTATTCCCTGCATTCGCC-GC 3007 Query 57918 AAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAGAGG 57974 ||||| || ||| | | || ||||| || || || | || || ||| || | Sbjct 3008 AAGGCTGACTGGGCCCTGAAGTGGAT---CGCCGACAAGGAGTCTACCTTTGCCCAGCGT 3064 Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034 || | || || ||||| ||||| ||||| ||||| ||||| ||||| | || || Sbjct 3065 CTCGTTGCCTTTGCCGCTGTCGAGGGTATCTTCTTCTCGGGTGCTTTTGCCTCCATCTTC 3124 Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094 ||| || || || || || ||||| || ||||| || ||||||| |||| || || Sbjct 3125 TGGCTGCGCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTGATCTCCCGT 3184 Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCG 58154 || ||||| || || ||||| ||||| ||||| | ||||| ||| || ||| || Sbjct 3185 GATGAGGGCCTTCACACTGACTTTGCTTGCCTGCTCTACTCCCACCTTAACAACCGCCCC 3244 Query 58155 ACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTC 58214 | | | | || |||||| |||||||| || || || || || || ||||| | Sbjct 3245 AGCAAGCAACTGATTGAGGACATCATCACCGATGCTGTTGCTATTGAGAAGGAGTTCTTG 3304 Query 58215 ACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATT 58274 || || ||||| || ||| |||| || |||||| || | ||| | |||||| Sbjct 3305 ACTGAGGCCCTGCCCTGTGCCCTGCTTGGCATGAACGCCGACCTCATGAAGACCTACATT 3364 Query 58275 GAGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACAACACGA 58332 || ||||| |||||| | || || | | || | || | ||| ||||| | | Sbjct 3365 GAATTTGTCGCCGACCGTCTCCTGATGGCCCTCGGCAACGACAAGGTC--TACAAGGCCA 3422 Query 58333 AAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAA 58392 || || ||||| |||||| | |||||||| | |||||||| ||||| ||||| | Sbjct 3423 GCAACCCCTTTGACTTTATGGAGAACATCTCGCTTGGTGGCAAGACCAACTTCTTCGAGA 3482 Query 58393 A 58393 | Sbjct 3483 A 3483 >seq30 Length=92847 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||||||||| ||||| || || ||| | || ||||| | || Sbjct 12476 ATGCAAATCTTTGTCAAGACTCTGACTGGCAAGACCATTACCCTGGAGGTTGAGACCTCG 12535 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | ||||| | || ||||||||| ||| | || || || ||| Sbjct 12536 GACACTATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCGGATCAG 12595 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || ||||| || ||| | |||||| | || || || || ||| Sbjct 12596 CAGCGTCTCATTTTTGCTGGAAAGCAGCTTGAAGACGGTCGTACCCTGGCAGACTACAAC 12655 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || || || || ||||| |||||||| ||| Sbjct 12656 ATCCAGAAGGAGTCTACTCTGCATCTGGTTCTT 12688 Score = 98.7 bits (108), Expect = 9e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262 |||| ||||| || || || || || |||||| | || || || | || |||| | | | Sbjct 12258 TCGTCAAGACCCTCACCGGAAAGACCATCACCCTAGAAGTCGAGTCCTCGGACACTATTG 12317 Query 31263 AAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAA 31322 | | ||||| | || ||||||||||||| | || || ||||||||||| || | Sbjct 12318 ACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGCATCCCCCCTGACCAGCAGCGCCTGA 12377 Query 31323 TATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAG 31382 | ||||| ||||| ||| |||| ||| | || || || || |||||||| || | Sbjct 12378 TTTTCGCAGGCAAGCAGCTGGAGGACGGTCGTACCCTGGCAGACTACAACATTCAGAAGG 12437 Query 31383 AATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | || ||||| ||||| || ||| | || | || |||| Sbjct 12438 AGTCTACTCTGCATCTCGTTCTTCGTCTCCGTGGTGGTA 12476 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 |||||| || || || | || | || || ||||| || |||||| |||| |||||| | Sbjct 11929 AAACATTCATATCGTCATCAATAGTC--ACTGGCAAGACCATCACCCTCGAGGTTGAATC 11986 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||| |||| |||| | |||||| | || || ||||| || | || || || Sbjct 11987 GTCAGACACCATCGACAACGTCAAATCCAAGATTCAAGATAAGGAGGGTATCCCCCCGGA 12046 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||||||||||| || || ||||| || ||| | |||||| | || | || || Sbjct 12047 TCAGCAGCGTCTCATTTTTGCTGGAAAGCAGCTTGAAGACGGTCGCACCCTTGCGGACTA 12106 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||||| || || || || ||||| ||||| || Sbjct 12107 CAACATTCAGAAGGAGTCCACCCTTCACCTGGTCCT 12142 >seq59 Length=73848 Score = 96.9 bits (106), Expect = 3e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || || || || ||||| ||| |||| ||||| | Sbjct 15636 AAGATGCAGATTTTCGTCAAGACCCTAACGGGTAAGACGATTACCCTCGAGGTTGAGTCC 15577 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| |||| | ||||| | || ||||||||| ||| | || || ||| Sbjct 15576 TCGGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGAC 15517 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || || || |||||||| ||| |||| || Sbjct 15516 CAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGA 15479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445759395895440