Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq54 91.5 3e-13 seq85 86.0 1e-11 >seq54 Length=76171 Score = 91.5 bits (100), Expect = 3e-13 Identities = 167/242 (69%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 94802 TCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATGCTATCATCTT 94861 |||||||||| || || || ||||| ||||| |||||||||||||| ||||| | Sbjct 18129 TCTTGGAGATCATAGCGCAAGTTTTCAGAGTGTCATAGATACCCTCAATGCTGTCATCCT 18070 Query 94862 GAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGTGTGACTGTTCCACAATTAAACAGTG 94921 | ||| ||||||||||| || ||||| | | || || || || || | Sbjct 18069 TCATATCCACGAGGAAGCACGAAGACAGTTGCGCCTGGGGAGTACCGGCGTTGAAAAGAG 18010 Query 94922 TGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTCAATGACAGATT 94981 | ||||| ||||| || || | | ||||||||||| | || || || | |||| || Sbjct 18009 TTGGGGATGCATGAGTGAAGAACTTGCTCGACATGAGGTTGTAGGTCTCCAGGACACGTT 17950 Query 94982 TGATGTC-TGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCTGAGGGCGCTCA 95040 | || | | || | || || ||||| |||||||| ||||||| ||||| ||||| Sbjct 17949 CAACATCATCACCCCAG-ATTCCAACAGCAACACGCATGATCATGTGTTGAGGACGCTCG 17891 Query 95041 AC 95042 || Sbjct 17890 AC 17889 >seq85 Length=66049 Score = 86.0 bits (94), Expect = 1e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 ||||||||||| || || || || |||||||| ||||| || || ||||| |||||| Sbjct 3068 GTTGCCTTTGCCGCTGTCGAGGGTATCTTCTTCTCGGGTGCTTTTGCCTCCATCTTCTGG 3127 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 | || | ||| | |||||||||| |||| |||||| ||| | || || | || Sbjct 3128 CTGCGCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTGATCTCCCGTGAT 3187 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCT 102069 || || ||||| |||||||| ||| |||| Sbjct 3188 GAGGGCCTTCACACTGACTTTGCTTGCCTGCT 3219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989568062440435