Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq54 168 8e-37 seq85 102 1e-16 >seq54 Length=76171 Score = 168 bits (186), Expect = 8e-37 Identities = 628/973 (65%), Gaps = 20/973 (2%) Strand=Plus/Minus Query 62948 AGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 63007 ||| || || || || || || ||||||| || | | |||| || ||||||||||| Sbjct 18743 AGAAGCAAGGTTGCAGACAGCAACCTCATCAGGAGCACAGTATTCAATAATCTCAGTGCA 18684 Query 63008 AAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 63067 || || | |||||| || | || | || |||||||| ||| || || Sbjct 18683 CAGGTTGGAGCTGCGGATAGTACCCAGGTTCTTCTGGTTACTCTTGCGGTTGCAGTGGTC 18624 Query 63068 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 63127 ||| || || ||||| || ||||||| ||| |||||| ||| | || || | ||| | Sbjct 18623 CTTGTACAGCATGAACGGGTTACCAGTCTCAGTCTGAGCTTCCAGGATAGCATACCACAG 18564 Query 63128 GACTCGAGCCTTTA---TTA-TAGATTTGTATC-TCCTTTCTCTTTCGTATAGAGTATAC 63182 | | || || | | | | || | | |||||| || | | | | | ||| Sbjct 18563 CTTTTGGGCTTTGAGAGTCAGTCGACCACGACCCTCCTTT-TCATACTTCTCG----TAC 18509 Query 63183 AATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATC 63242 ||| |||||||| || || || | ||| | ||| || |||| || ||||| Sbjct 18508 AATGCCTCGAACTCATCGCCGTAACAGTCAGCCAGACCAGGGCACTCATTGGGGCACATA 18449 Query 63243 AACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 63302 | | |||||| ||| | | || || ||||| || |||||||| ||||| ||||| Sbjct 18448 AGAGTCCACTCGGCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCACAGAGCC 18389 Query 63303 ATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 63362 | || ||||| | | | ||| || || || |||||| |||||||||||| Sbjct 18388 AGGAAAAGATCACGGGCACGGACTTCTTCTTTGCCGTGATTCTTGCGGAGATCGAGGAAC 18329 Query 63363 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTT 63422 | | || ||| | |||||||| || | ||| || || | | | ||||| || ||||| Sbjct 18328 TCAAAAACATCCGCGTGCCACGGCTCGAGGTAGATAGCAAAAGCACCAGGACGCTTGTTG 18269 Query 63423 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63482 || ||||| || | ||| | ||| ||||| || | || | || ||| |||| |||||| Sbjct 18268 CCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATAGGAACGATACCG 18209 Query 63483 TTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAAT--ATTACTAATTG 63540 || || |||| || || |||| || || ||| |||||||||| | | || Sbjct 18208 TTCGAGGTACCGTTAGTGCCGGCAATGTAAGAACCAGTGGCACGAATGCGGTGCACGTT- 18150 Query 63541 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGA 63600 || || || || || ||||| || ||||| | ||||| ||| | |||||||||| Sbjct 18149 -CAGGCCAATACCACCCGCCATCTTGGAGATCATAGCGCAAGTTTTCAGAGTGTCATAGA 18091 Query 63601 TGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAG 63660 | || || ||||| ||||| |||| | | || || || ||||| ||| | | Sbjct 18090 TACCCTCAATGCTGTCATCCTTCATATCCACGAGGAAGCACGAAGACAGTTGCGCCTGGG 18031 Query 63661 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 63720 ||| || || || || | || || || || || || || | || || | || | Sbjct 18030 GAGTACCGGCGTTGAAAAGAGTTGGGGATGCATGAGTGAAGAACTTGCTCGACATGAGGT 17971 Query 63721 TGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATT 63779 |||| ||||| | | || | ||| || | ||||| || || |||||||| Sbjct 17970 TGTAGGTCTCCAGGACACGTTCAACATCATCACCCCAG-ATTCCAACAGCAACACGCATG 17912 Query 63780 AACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63839 | |||||| ||||| | || || || ||| || | |||| | ||| || || Sbjct 17911 ATCATGTGTTGAGGACGCTCGACGATCTTGCCGTCAAGCTTCAGGAGGTATGAACGCTCA 17852 Query 63840 AAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAAT 63897 | || || |||||||| || | ||| ||||| || || ||||| | ||| |||| | Sbjct 17851 AGCGTCTTGAAACCAAAGTATTGGTAGTTGAAA--TCACGATCGTACACGATAGCCGAGT 17794 Query 63898 TGAGCTTATCCTT 63910 |||| ||||| Sbjct 17793 CCAGCTCTTCCTT 17781 >seq85 Length=66049 Score = 102 bits (112), Expect = 1e-16 Identities = 346/537 (64%), Gaps = 8/537 (1%) Strand=Plus/Minus Query 33624 TCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCG 33683 ||||| || || || || || ||||| || |||||||| ||||| || ||||| || Sbjct 3171 TCGTTGGAGAAGGTCAGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCA 3112 Query 33684 AATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA 33743 || | || || |||||||| || || || || |||||||||| || | || || | Sbjct 3111 AAAGCACCCGAGAAGAAGATACCCTCGACAGCGGCAAAGGCAACGAGACGCTGGGCAAAG 3052 Query 33744 CCGG---CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 33800 | | |||| |||||||| | ||||| || ||||| | || || Sbjct 3051 GTAGACTCCTTGTCGGCGATCCACTTCAGGGCCCAGTCAGCCTTGCGGCGAATGCAGGGA 2992 Query 33801 ATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCG 33860 || || || ||||| || || || ||| | || || | || ||||| Sbjct 2991 ATAGTATCAATGGCGTTGAACAGGTAGGAACGCTGGGCGGGCTCCTTGATGTAGGTATCA 2932 Query 33861 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAA 33920 || | || || | || || ||||||||||| || ||||| || || || || Sbjct 2931 ATGAGCAGCGAGTAGGTCTCGGAGTGAATGTTTTCCATCATGATCTGGAAACCATAAAAG 2872 Query 33921 CATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACT 33980 || | ||||||| |||||| || || | | || || || | || || || || || Sbjct 2871 CAGCGGGCCTCGGGAATCTGGACCTCGGCGGAGAAACGCTCAACCAAGTTCTCGTTGACG 2812 Query 33981 ATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGT 34040 || || ||| ||| ||||| || |||| | || ||||| | | |||||| | Sbjct 2811 ATACCGTCAGAGGCGGCAAAGAAAGCCAGGATGTGGGAGATAAAGAACTGCTCGTCT-TT 2753 Query 34041 GTT----AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCA 34096 ||| | || ||||| || | || ||| || || | ||| | || || | ||||| Sbjct 2752 GTTCATGCGGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATCTCCTCGGCGGTCCA 2693 Query 34097 AAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAA 34153 || || ||||| ||||| || ||||| | |||||| || || || | ||| ||||| Sbjct 2692 GAAAGAAGCCTCGGCCTTCTTGTACATTTGCCAGATCTCGTGGTACTTGATGGGGAA 2636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629807703990960