Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq54 168 8e-37
seq85 102 1e-16
>seq54
Length=76171
Score = 168 bits (186), Expect = 8e-37
Identities = 628/973 (65%), Gaps = 20/973 (2%)
Strand=Plus/Minus
Query 62948 AGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 63007
||| || || || || || || ||||||| || | | |||| || |||||||||||
Sbjct 18743 AGAAGCAAGGTTGCAGACAGCAACCTCATCAGGAGCACAGTATTCAATAATCTCAGTGCA 18684
Query 63008 AAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 63067
|| || | |||||| || | || | || |||||||| ||| || ||
Sbjct 18683 CAGGTTGGAGCTGCGGATAGTACCCAGGTTCTTCTGGTTACTCTTGCGGTTGCAGTGGTC 18624
Query 63068 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 63127
||| || || ||||| || ||||||| ||| |||||| ||| | || || | ||| |
Sbjct 18623 CTTGTACAGCATGAACGGGTTACCAGTCTCAGTCTGAGCTTCCAGGATAGCATACCACAG 18564
Query 63128 GACTCGAGCCTTTA---TTA-TAGATTTGTATC-TCCTTTCTCTTTCGTATAGAGTATAC 63182
| | || || | | | | || | | |||||| || | | | | | |||
Sbjct 18563 CTTTTGGGCTTTGAGAGTCAGTCGACCACGACCCTCCTTT-TCATACTTCTCG----TAC 18509
Query 63183 AATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATC 63242
||| |||||||| || || || | ||| | ||| || |||| || |||||
Sbjct 18508 AATGCCTCGAACTCATCGCCGTAACAGTCAGCCAGACCAGGGCACTCATTGGGGCACATA 18449
Query 63243 AACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 63302
| | |||||| ||| | | || || ||||| || |||||||| ||||| |||||
Sbjct 18448 AGAGTCCACTCGGCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCACAGAGCC 18389
Query 63303 ATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 63362
| || ||||| | | | ||| || || || |||||| ||||||||||||
Sbjct 18388 AGGAAAAGATCACGGGCACGGACTTCTTCTTTGCCGTGATTCTTGCGGAGATCGAGGAAC 18329
Query 63363 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTT 63422
| | || ||| | |||||||| || | ||| || || | | | ||||| || |||||
Sbjct 18328 TCAAAAACATCCGCGTGCCACGGCTCGAGGTAGATAGCAAAAGCACCAGGACGCTTGTTG 18269
Query 63423 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63482
|| ||||| || | ||| | ||| ||||| || | || | || ||| |||| ||||||
Sbjct 18268 CCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATAGGAACGATACCG 18209
Query 63483 TTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAAT--ATTACTAATTG 63540
|| || |||| || || |||| || || ||| |||||||||| | | ||
Sbjct 18208 TTCGAGGTACCGTTAGTGCCGGCAATGTAAGAACCAGTGGCACGAATGCGGTGCACGTT- 18150
Query 63541 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGA 63600
|| || || || || ||||| || ||||| | ||||| ||| | ||||||||||
Sbjct 18149 -CAGGCCAATACCACCCGCCATCTTGGAGATCATAGCGCAAGTTTTCAGAGTGTCATAGA 18091
Query 63601 TGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAG 63660
| || || ||||| ||||| |||| | | || || || ||||| ||| | |
Sbjct 18090 TACCCTCAATGCTGTCATCCTTCATATCCACGAGGAAGCACGAAGACAGTTGCGCCTGGG 18031
Query 63661 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 63720
||| || || || || | || || || || || || || | || || | || |
Sbjct 18030 GAGTACCGGCGTTGAAAAGAGTTGGGGATGCATGAGTGAAGAACTTGCTCGACATGAGGT 17971
Query 63721 TGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATT 63779
|||| ||||| | | || | ||| || | ||||| || || ||||||||
Sbjct 17970 TGTAGGTCTCCAGGACACGTTCAACATCATCACCCCAG-ATTCCAACAGCAACACGCATG 17912
Query 63780 AACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63839
| |||||| ||||| | || || || ||| || | |||| | ||| || ||
Sbjct 17911 ATCATGTGTTGAGGACGCTCGACGATCTTGCCGTCAAGCTTCAGGAGGTATGAACGCTCA 17852
Query 63840 AAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAAT 63897
| || || |||||||| || | ||| ||||| || || ||||| | ||| |||| |
Sbjct 17851 AGCGTCTTGAAACCAAAGTATTGGTAGTTGAAA--TCACGATCGTACACGATAGCCGAGT 17794
Query 63898 TGAGCTTATCCTT 63910
|||| |||||
Sbjct 17793 CCAGCTCTTCCTT 17781
>seq85
Length=66049
Score = 102 bits (112), Expect = 1e-16
Identities = 346/537 (64%), Gaps = 8/537 (1%)
Strand=Plus/Minus
Query 33624 TCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCG 33683
||||| || || || || || ||||| || |||||||| ||||| || ||||| ||
Sbjct 3171 TCGTTGGAGAAGGTCAGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCA 3112
Query 33684 AATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA 33743
|| | || || |||||||| || || || || |||||||||| || | || || |
Sbjct 3111 AAAGCACCCGAGAAGAAGATACCCTCGACAGCGGCAAAGGCAACGAGACGCTGGGCAAAG 3052
Query 33744 CCGG---CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 33800
| | |||| |||||||| | ||||| || ||||| | || ||
Sbjct 3051 GTAGACTCCTTGTCGGCGATCCACTTCAGGGCCCAGTCAGCCTTGCGGCGAATGCAGGGA 2992
Query 33801 ATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCG 33860
|| || || ||||| || || || ||| | || || | || |||||
Sbjct 2991 ATAGTATCAATGGCGTTGAACAGGTAGGAACGCTGGGCGGGCTCCTTGATGTAGGTATCA 2932
Query 33861 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAA 33920
|| | || || | || || ||||||||||| || ||||| || || || ||
Sbjct 2931 ATGAGCAGCGAGTAGGTCTCGGAGTGAATGTTTTCCATCATGATCTGGAAACCATAAAAG 2872
Query 33921 CATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACT 33980
|| | ||||||| |||||| || || | | || || || | || || || || ||
Sbjct 2871 CAGCGGGCCTCGGGAATCTGGACCTCGGCGGAGAAACGCTCAACCAAGTTCTCGTTGACG 2812
Query 33981 ATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGT 34040
|| || ||| ||| ||||| || |||| | || ||||| | | |||||| |
Sbjct 2811 ATACCGTCAGAGGCGGCAAAGAAAGCCAGGATGTGGGAGATAAAGAACTGCTCGTCT-TT 2753
Query 34041 GTT----AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCA 34096
||| | || ||||| || | || ||| || || | ||| | || || | |||||
Sbjct 2752 GTTCATGCGGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATCTCCTCGGCGGTCCA 2693
Query 34097 AAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAA 34153
|| || ||||| ||||| || ||||| | |||||| || || || | ||| |||||
Sbjct 2692 GAAAGAAGCCTCGGCCTTCTTGTACATTTGCCAGATCTCGTGGTACTTGATGGGGAA 2636
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629807703990960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |