Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq54 161 1e-34
>seq54
Length=76171
Score = 161 bits (178), Expect = 1e-34
Identities = 484/740 (65%), Gaps = 18/740 (2%)
Strand=Plus/Minus
Query 65973 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACAC 66032
|||||| |||||||| || || || | ||| ||||| || |||| || |||
Sbjct 18511 TACAATGCCTCGAACTCATCGCCGTAACAGTCAGCCAGACCAGGGCACTCATTGGGGCAC 18452
Query 66033 ATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 66092
|| | | |||||| ||| | | || || ||||| || |||||||| ||||| |||
Sbjct 18451 ATAAGAGTCCACTCGGCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCACAGA 18392
Query 66093 GCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 66152
|| | || | ||| | || | ||| || || || |||||| |||||||||
Sbjct 18391 GCCAGGAAAAGATCACGGGCACGGACTTCTTCTTTGCCGTGATTCTTGCGGAGATCGAGG 18332
Query 66153 AACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTG 66212
||| | | || ||| |||||||| || | ||| || || | | | ||||| || |||
Sbjct 18331 AACTCAAAAACATCCGCGTGCCACGGCTCGAGGTAGATAGCAAAAGCACCAGGACGCTTG 18272
Query 66213 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 66272
|| || ||||| || | ||| | ||| ||||| || | || | || ||| |||| |||
Sbjct 18271 TTGCCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATAGGAACGATA 18212
Query 66273 CCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAAT--ATTACTAA 66330
|| || || ||||| || || |||| || || ||| | |||||||| | |
Sbjct 18211 CCGTTCGAGGTACCGTTAGTGCCGGCAATGTAAGAACCAGTGGCACGAATGCGGTGCACG 18152
Query 66331 TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCAT 66390
|| || || || || || ||||| || ||||| | ||||| ||| | || ||||
Sbjct 18151 TT--CAGGCCAATACCACCCGCCATCTTGGAGATCATAGCGCAAGTTTTCAGAGTGTCAT 18094
Query 66391 AGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC 66450
|||| ||||| || || |||||| |||| | | || || || ||||| ||| |
Sbjct 18093 AGATACCCTCAATGCTGTCATCCTTCATATCCACGAGGAAGCACGAAGACAGTTG----C 18038
Query 66451 GACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAA 66506
| || ||| || || || || | || || || || || || || | || ||
Sbjct 18037 GCCTGGGGAGTACCGGCGTTGAAAAGAGTTGGGGATGCATGAGTGAAGAACTTGCTCGAC 17978
Query 66507 AGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGAC 66565
| || ||||| ||||| | | || | ||| || | ||||| || || ||
Sbjct 17977 ATGAGGTTGTAGGTCTCCAGGACACGTTCAACATCATCACCCCAG-ATTCCAACAGCAAC 17919
Query 66566 ACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGA 66625
|||||| | |||||| ||||| | || ||||||||| || | |||| | ||| ||
Sbjct 17918 ACGCATGATCATGTGTTGAGGACGCTCGACGATCTTGCCGTCAAGCTTCAGGAGGTATGA 17859
Query 66626 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATA 66683
|| | || || |||||||| || | ||| ||||| || || ||||| | |||
Sbjct 17858 ACGCTCAAGCGTCTTGAAACCAAAGTATTGGTAGTTGAAA--TCACGATCGTACACGATA 17801
Query 66684 ACCGAGTTGAGTTTATCCTT 66703
|||||| || | |||||
Sbjct 17800 GCCGAGTCCAGCTCTTCCTT 17781
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658162458459880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |