Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq54 161 1e-34 >seq54 Length=76171 Score = 161 bits (178), Expect = 1e-34 Identities = 484/740 (65%), Gaps = 18/740 (2%) Strand=Plus/Minus Query 65973 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACAC 66032 |||||| |||||||| || || || | ||| ||||| || |||| || ||| Sbjct 18511 TACAATGCCTCGAACTCATCGCCGTAACAGTCAGCCAGACCAGGGCACTCATTGGGGCAC 18452 Query 66033 ATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 66092 || | | |||||| ||| | | || || ||||| || |||||||| ||||| ||| Sbjct 18451 ATAAGAGTCCACTCGGCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCACAGA 18392 Query 66093 GCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 66152 || | || | ||| | || | ||| || || || |||||| ||||||||| Sbjct 18391 GCCAGGAAAAGATCACGGGCACGGACTTCTTCTTTGCCGTGATTCTTGCGGAGATCGAGG 18332 Query 66153 AACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTG 66212 ||| | | || ||| |||||||| || | ||| || || | | | ||||| || ||| Sbjct 18331 AACTCAAAAACATCCGCGTGCCACGGCTCGAGGTAGATAGCAAAAGCACCAGGACGCTTG 18272 Query 66213 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 66272 || || ||||| || | ||| | ||| ||||| || | || | || ||| |||| ||| Sbjct 18271 TTGCCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATAGGAACGATA 18212 Query 66273 CCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAAT--ATTACTAA 66330 || || || ||||| || || |||| || || ||| | |||||||| | | Sbjct 18211 CCGTTCGAGGTACCGTTAGTGCCGGCAATGTAAGAACCAGTGGCACGAATGCGGTGCACG 18152 Query 66331 TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCAT 66390 || || || || || || ||||| || ||||| | ||||| ||| | || |||| Sbjct 18151 TT--CAGGCCAATACCACCCGCCATCTTGGAGATCATAGCGCAAGTTTTCAGAGTGTCAT 18094 Query 66391 AGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC 66450 |||| ||||| || || |||||| |||| | | || || || ||||| ||| | Sbjct 18093 AGATACCCTCAATGCTGTCATCCTTCATATCCACGAGGAAGCACGAAGACAGTTG----C 18038 Query 66451 GACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAA 66506 | || ||| || || || || | || || || || || || || | || || Sbjct 18037 GCCTGGGGAGTACCGGCGTTGAAAAGAGTTGGGGATGCATGAGTGAAGAACTTGCTCGAC 17978 Query 66507 AGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGAC 66565 | || ||||| ||||| | | || | ||| || | ||||| || || || Sbjct 17977 ATGAGGTTGTAGGTCTCCAGGACACGTTCAACATCATCACCCCAG-ATTCCAACAGCAAC 17919 Query 66566 ACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGA 66625 |||||| | |||||| ||||| | || ||||||||| || | |||| | ||| || Sbjct 17918 ACGCATGATCATGTGTTGAGGACGCTCGACGATCTTGCCGTCAAGCTTCAGGAGGTATGA 17859 Query 66626 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATA 66683 || | || || |||||||| || | ||| ||||| || || ||||| | ||| Sbjct 17858 ACGCTCAAGCGTCTTGAAACCAAAGTATTGGTAGTTGAAA--TCACGATCGTACACGATA 17801 Query 66684 ACCGAGTTGAGTTTATCCTT 66703 |||||| || | ||||| Sbjct 17800 GCCGAGTCCAGCTCTTCCTT 17781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658162458459880