Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq54 163 4e-35 seq85 127 3e-24 >seq54 Length=76171 Score = 163 bits (180), Expect = 4e-35 Identities = 632/979 (65%), Gaps = 32/979 (3%) Strand=Plus/Minus Query 79620 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCA 79679 ||| || || || || || || ||||||| || | | |||| || || |||||||| Sbjct 18743 AGAAGCAAGGTTGCAGACAGCAACCTCATCAGGAGCACAGTATTCAATAATCTCAGTGCA 18684 Query 79680 GAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 79739 ||||| | || || || | || | || |||||||| ||| || || Sbjct 18683 CAGGTTGGAGCTGCGGATAGTACCCAGGTTCTTCTGGTTACTCTTGCGGTTGCAGTGGTC 18624 Query 79740 CTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 79799 ||| || || |||||||| ||||||| ||| |||||| ||| | || || | ||| | Sbjct 18623 CTTGTACAGCATGAACGGGTTACCAGTCTCAGTCTGAGCTTCCAGGATAGCATACCACAG 18564 Query 79800 GACTCGAGCCTTTA---TTA-TAGACTTGTATC-TCTTTTCTCTTTCGTATTGTGTATAT 79854 | | || || | | | | ||| | | || ||| || | | | | || | Sbjct 18563 CTTTTGGGCTTTGAGAGTCAGTCGACCACGACCCTCCTTT-TCATACTTCTCGT----AC 18509 Query 79855 AATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATC 79914 ||| |||||||| || || || || | | ||||| || || | || ||||| Sbjct 18508 AATGCCTCGAACTCATCGCCGTAACAGTCAGCCAGACCAGGGCACTCATTGGGGCACATA 18449 Query 79915 AACGACCACTCTCCATCATCCTTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 79972 | | |||||| | | || ||| || || ||||| || |||||||| ||||| |||| Sbjct 18448 AGAGTCCACTCGGCGT--TCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCACAGAG 18391 Query 79973 CTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 80032 | | || ||||| | || | || || || || |||||| |||||||||| Sbjct 18390 CCAGGAAAAGATCACGGGCACGGACTTCTTCTTTGCCGTGATTCTTGCGGAGATCGAGGA 18331 Query 80033 ACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGT 80092 || | | || ||| | |||||||| || | ||| || || | | | || || || |||| Sbjct 18330 ACTCAAAAACATCCGCGTGCCACGGCTCGAGGTAGATAGCAAAAGCACCAGGACGCTTGT 18271 Query 80093 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 80152 | || ||||| || | ||| | ||| ||||| || | || | || ||| |||| |||| Sbjct 18270 TGCCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATAGGAACGATAC 18211 Query 80153 CATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAAT 80210 | || || ||||| || || |||| || || ||| |||||||||| | | | Sbjct 18210 CGTTCGAGGTACCGTTAGTGCCGGCAATGTAAGAACCAGTGGCACGAATGCGGTGCACGT 18151 Query 80211 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATA 80270 | || || || || || ||||| || ||||| | ||||| ||| | || ||||| Sbjct 18150 T--CAGGCCAATACCACCCGCCATCTTGGAGATCATAGCGCAAGTTTTCAGAGTGTCATA 18093 Query 80271 GATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 80330 ||| ||||| ||||| ||||| |||| | | || || || ||||| ||| || Sbjct 18092 GATACCCTCAATGCTGTCATCCTTCATATCCACGAGGAAGCACGAAGACAGTTG----CG 18037 Query 80331 ACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA 80386 || ||| || || || || | || || || || || || || | || |||| Sbjct 18036 CCTGGGGAGTACCGGCGTTGAAAAGAGTTGGGGATGCATGAGTGAAGAACTTGCTCGACA 17977 Query 80387 GTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGAATTCCTACCGCGACA 80445 || ||||| ||||| | | ||| | ||| || | ||||| || || ||| Sbjct 17976 TGAGGTTGTAGGTCTCCAGGACACGTTCAACATCATCACCCCAG-ATTCCAACAGCAACA 17918 Query 80446 CGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGAT 80505 ||||| | |||||| ||||| | || ||||||||| | | |||| | ||| || Sbjct 17917 CGCATGATCATGTGTTGAGGACGCTCGACGATCTTGCCGTCAAGCTTCAGGAGGTATGAA 17858 Query 80506 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAA 80563 || | || || |||||||| || | ||| ||||| || || ||||| | ||| Sbjct 17857 CGCTCAAGCGTCTTGAAACCAAAGTATTGGTAGTTGAAA--TCACGATCGTACACGATAG 17800 Query 80564 CCGAGTTGAGTTTATCCTT 80582 |||||| || | ||||| Sbjct 17799 CCGAGTCCAGCTCTTCCTT 17781 >seq85 Length=66049 Score = 127 bits (140), Expect = 3e-24 Identities = 354/542 (65%), Gaps = 6/542 (1%) Strand=Plus/Minus Query 49996 ATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 50055 || || |||||||| || || || || ||||| || |||||||| ||||| || ||| Sbjct 3177 ATCAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAGATG 3118 Query 50056 GACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCT 50115 || ||||| | || || |||||||| || || || |||||||||||||| || | || Sbjct 3117 GAGGCAAAAGCACCCGAGAAGAAGATACCCTCGACAGCGGCAAAGGCAACGAGACGCTGG 3058 Query 50116 CCATAACTGG---CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACA 50172 || | | | | |||| |||||||| | ||||| || ||||| | Sbjct 3057 GCAAAGGTAGACTCCTTGTCGGCGATCCACTTCAGGGCCCAGTCAGCCTTGCGGCGAATG 2998 Query 50173 CAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAA 50232 || || || || || ||||| || || || ||| | || || | || Sbjct 2997 CAGGGAATAGTATCAATGGCGTTGAACAGGTAGGAACGCTGGGCGGGCTCCTTGATGTAG 2938 Query 50233 GTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCG 50292 ||||| || | || || | || || ||||||||||| || ||||| || || Sbjct 2937 GTATCAATGAGCAGCGAGTAGGTCTCGGAGTGAATGTTTTCCATCATGATCTGGAAACCA 2878 Query 50293 TAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCA 50352 || || || | ||||||| |||||| || || | | || || ||| | || || || Sbjct 2877 TAAAAGCAGCGGGCCTCGGGAATCTGGACCTCGGCGGAGAAACGCTCAACCAAGTTCTCG 2818 Query 50353 TTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA---AAATGTTTT 50409 || || || |||||| ||| ||||| || |||| | || ||| || || | Sbjct 2817 TTGACGATACCGTCAGAGGCGGCAAAGAAAGCCAGGATGTGGGAGATAAAGAACTGCTCG 2758 Query 50410 TCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACT 50469 || ||| | | || ||||| || | || ||| || || | ||| | || || | Sbjct 2757 TCTTTGTTCATGCGGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATCTCCTCGGCG 2698 Query 50470 GTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGG 50529 ||||| || || ||||| ||||| || ||||| | |||||| || || || | ||| ||| Sbjct 2697 GTCCAGAAAGAAGCCTCGGCCTTCTTGTACATTTGCCAGATCTCGTGGTACTTGATGGGG 2638 Query 50530 AA 50531 || Sbjct 2637 AA 2636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718257514201480