Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq54 163 4e-35
seq85 127 3e-24
>seq54
Length=76171
Score = 163 bits (180), Expect = 4e-35
Identities = 632/979 (65%), Gaps = 32/979 (3%)
Strand=Plus/Minus
Query 79620 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCA 79679
||| || || || || || || ||||||| || | | |||| || || ||||||||
Sbjct 18743 AGAAGCAAGGTTGCAGACAGCAACCTCATCAGGAGCACAGTATTCAATAATCTCAGTGCA 18684
Query 79680 GAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 79739
||||| | || || || | || | || |||||||| ||| || ||
Sbjct 18683 CAGGTTGGAGCTGCGGATAGTACCCAGGTTCTTCTGGTTACTCTTGCGGTTGCAGTGGTC 18624
Query 79740 CTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 79799
||| || || |||||||| ||||||| ||| |||||| ||| | || || | ||| |
Sbjct 18623 CTTGTACAGCATGAACGGGTTACCAGTCTCAGTCTGAGCTTCCAGGATAGCATACCACAG 18564
Query 79800 GACTCGAGCCTTTA---TTA-TAGACTTGTATC-TCTTTTCTCTTTCGTATTGTGTATAT 79854
| | || || | | | | ||| | | || ||| || | | | | || |
Sbjct 18563 CTTTTGGGCTTTGAGAGTCAGTCGACCACGACCCTCCTTT-TCATACTTCTCGT----AC 18509
Query 79855 AATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATC 79914
||| |||||||| || || || || | | ||||| || || | || |||||
Sbjct 18508 AATGCCTCGAACTCATCGCCGTAACAGTCAGCCAGACCAGGGCACTCATTGGGGCACATA 18449
Query 79915 AACGACCACTCTCCATCATCCTTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 79972
| | |||||| | | || ||| || || ||||| || |||||||| ||||| ||||
Sbjct 18448 AGAGTCCACTCGGCGT--TCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCACAGAG 18391
Query 79973 CTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 80032
| | || ||||| | || | || || || || |||||| ||||||||||
Sbjct 18390 CCAGGAAAAGATCACGGGCACGGACTTCTTCTTTGCCGTGATTCTTGCGGAGATCGAGGA 18331
Query 80033 ACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGT 80092
|| | | || ||| | |||||||| || | ||| || || | | | || || || ||||
Sbjct 18330 ACTCAAAAACATCCGCGTGCCACGGCTCGAGGTAGATAGCAAAAGCACCAGGACGCTTGT 18271
Query 80093 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 80152
| || ||||| || | ||| | ||| ||||| || | || | || ||| |||| ||||
Sbjct 18270 TGCCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATAGGAACGATAC 18211
Query 80153 CATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAAT 80210
| || || ||||| || || |||| || || ||| |||||||||| | | |
Sbjct 18210 CGTTCGAGGTACCGTTAGTGCCGGCAATGTAAGAACCAGTGGCACGAATGCGGTGCACGT 18151
Query 80211 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATA 80270
| || || || || || ||||| || ||||| | ||||| ||| | || |||||
Sbjct 18150 T--CAGGCCAATACCACCCGCCATCTTGGAGATCATAGCGCAAGTTTTCAGAGTGTCATA 18093
Query 80271 GATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 80330
||| ||||| ||||| ||||| |||| | | || || || ||||| ||| ||
Sbjct 18092 GATACCCTCAATGCTGTCATCCTTCATATCCACGAGGAAGCACGAAGACAGTTG----CG 18037
Query 80331 ACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA 80386
|| ||| || || || || | || || || || || || || | || ||||
Sbjct 18036 CCTGGGGAGTACCGGCGTTGAAAAGAGTTGGGGATGCATGAGTGAAGAACTTGCTCGACA 17977
Query 80387 GTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGAATTCCTACCGCGACA 80445
|| ||||| ||||| | | ||| | ||| || | ||||| || || |||
Sbjct 17976 TGAGGTTGTAGGTCTCCAGGACACGTTCAACATCATCACCCCAG-ATTCCAACAGCAACA 17918
Query 80446 CGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGAT 80505
||||| | |||||| ||||| | || ||||||||| | | |||| | ||| ||
Sbjct 17917 CGCATGATCATGTGTTGAGGACGCTCGACGATCTTGCCGTCAAGCTTCAGGAGGTATGAA 17858
Query 80506 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAA 80563
|| | || || |||||||| || | ||| ||||| || || ||||| | |||
Sbjct 17857 CGCTCAAGCGTCTTGAAACCAAAGTATTGGTAGTTGAAA--TCACGATCGTACACGATAG 17800
Query 80564 CCGAGTTGAGTTTATCCTT 80582
|||||| || | |||||
Sbjct 17799 CCGAGTCCAGCTCTTCCTT 17781
>seq85
Length=66049
Score = 127 bits (140), Expect = 3e-24
Identities = 354/542 (65%), Gaps = 6/542 (1%)
Strand=Plus/Minus
Query 49996 ATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 50055
|| || |||||||| || || || || ||||| || |||||||| ||||| || |||
Sbjct 3177 ATCAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAGATG 3118
Query 50056 GACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCT 50115
|| ||||| | || || |||||||| || || || |||||||||||||| || | ||
Sbjct 3117 GAGGCAAAAGCACCCGAGAAGAAGATACCCTCGACAGCGGCAAAGGCAACGAGACGCTGG 3058
Query 50116 CCATAACTGG---CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACA 50172
|| | | | | |||| |||||||| | ||||| || ||||| |
Sbjct 3057 GCAAAGGTAGACTCCTTGTCGGCGATCCACTTCAGGGCCCAGTCAGCCTTGCGGCGAATG 2998
Query 50173 CAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAA 50232
|| || || || || ||||| || || || ||| | || || | ||
Sbjct 2997 CAGGGAATAGTATCAATGGCGTTGAACAGGTAGGAACGCTGGGCGGGCTCCTTGATGTAG 2938
Query 50233 GTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCG 50292
||||| || | || || | || || ||||||||||| || ||||| || ||
Sbjct 2937 GTATCAATGAGCAGCGAGTAGGTCTCGGAGTGAATGTTTTCCATCATGATCTGGAAACCA 2878
Query 50293 TAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCA 50352
|| || || | ||||||| |||||| || || | | || || ||| | || || ||
Sbjct 2877 TAAAAGCAGCGGGCCTCGGGAATCTGGACCTCGGCGGAGAAACGCTCAACCAAGTTCTCG 2818
Query 50353 TTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA---AAATGTTTT 50409
|| || || |||||| ||| ||||| || |||| | || ||| || || |
Sbjct 2817 TTGACGATACCGTCAGAGGCGGCAAAGAAAGCCAGGATGTGGGAGATAAAGAACTGCTCG 2758
Query 50410 TCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACT 50469
|| ||| | | || ||||| || | || ||| || || | ||| | || || |
Sbjct 2757 TCTTTGTTCATGCGGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATCTCCTCGGCG 2698
Query 50470 GTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGG 50529
||||| || || ||||| ||||| || ||||| | |||||| || || || | ||| |||
Sbjct 2697 GTCCAGAAAGAAGCCTCGGCCTTCTTGTACATTTGCCAGATCTCGTGGTACTTGATGGGG 2638
Query 50530 AA 50531
||
Sbjct 2637 AA 2636
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718257514201480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |