Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq85 96.9 3e-15 >seq85 Length=66049 Score = 96.9 bits (106), Expect = 3e-15 Identities = 198/291 (68%), Gaps = 5/291 (2%) Strand=Plus/Minus Query 13930 ATGTATGTATCAATAAGTAAGCTA-TACATTTCAGAGTGTATGTTTTCTATAGCTATCTG 13988 ||||| |||||||| || | || | || | || ||||| |||||||| || ||||| Sbjct 2943 ATGTAGGTATCAATGAGCA-GCGAGTAGGTCTCGGAGTGAATGTTTTCCATCATGATCTG 2885 Query 13989 AAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAA 14048 ||||||||||| || | || || | || ||||| | | | || | || |||| Sbjct 2884 GAAACCATAAAAGCAGCGGGCCTCGGGAATCTGGACCTCGGCGGAGAAACGCTCAACCAA 2825 Query 14049 GTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTA 14108 ||| || || || ||||| ||| || ||||| || |||| |||| |||||| | Sbjct 2824 GTTCTCGTTGACGATACCGTCAGAGGCGGCAAAGAAAGCCAGGATGTGGGAGATAAAGAA 2765 Query 14109 TTGCTCTTCATTGT---TGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTC 14165 ||||| || |||| || | || ||||| ||| | |||||| || ||||| | || Sbjct 2764 CTGCTCGTCTTTGTTCATGCGGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATCTC 2705 Query 14166 ATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTC 14216 || | ||||| ||| ||| | || || || |||||| ||| || || Sbjct 2704 CTCGGCGGTCCAGAAAGAAGCCTCGGCCTTCTTGTACATTTGCCAGATCTC 2654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478581280173480