Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq85 96.9 3e-15
>seq85
Length=66049
Score = 96.9 bits (106), Expect = 3e-15
Identities = 198/291 (68%), Gaps = 5/291 (2%)
Strand=Plus/Minus
Query 13930 ATGTATGTATCAATAAGTAAGCTA-TACATTTCAGAGTGTATGTTTTCTATAGCTATCTG 13988
||||| |||||||| || | || | || | || ||||| |||||||| || |||||
Sbjct 2943 ATGTAGGTATCAATGAGCA-GCGAGTAGGTCTCGGAGTGAATGTTTTCCATCATGATCTG 2885
Query 13989 AAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAA 14048
||||||||||| || | || || | || ||||| | | | || | || ||||
Sbjct 2884 GAAACCATAAAAGCAGCGGGCCTCGGGAATCTGGACCTCGGCGGAGAAACGCTCAACCAA 2825
Query 14049 GTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTA 14108
||| || || || ||||| ||| || ||||| || |||| |||| |||||| |
Sbjct 2824 GTTCTCGTTGACGATACCGTCAGAGGCGGCAAAGAAAGCCAGGATGTGGGAGATAAAGAA 2765
Query 14109 TTGCTCTTCATTGT---TGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTC 14165
||||| || |||| || | || ||||| ||| | |||||| || ||||| | ||
Sbjct 2764 CTGCTCGTCTTTGTTCATGCGGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATCTC 2705
Query 14166 ATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTC 14216
|| | ||||| ||| ||| | || || || |||||| ||| || ||
Sbjct 2704 CTCGGCGGTCCAGAAAGAAGCCTCGGCCTTCTTGTACATTTGCCAGATCTC 2654
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478581280173480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |