Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq54 161 1e-34
seq85 111 2e-19
>seq54
Length=76171
Score = 161 bits (178), Expect = 1e-34
Identities = 454/688 (66%), Gaps = 22/688 (3%)
Strand=Plus/Minus
Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCGTTTCA 72031
||||| || ||||| || ||||| | | |||||| | | || ||| || || ||||
Sbjct 18472 CCAGGGCACTCATTGGGGCACATAAGAGTCCACTCGGCGT--TCTTTTCAACACGCTTCA 18415
Query 72032 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTC 72091
| || |||||||| ||||| ||||| | || ||||| | || | || || || |
Sbjct 18414 TGAAAAGATCAGGGATCCACAGAGCCAGGAAAAGATCACGGGCACGGACTTCTTCTTTGC 18355
Query 72092 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 72151
| |||||| |||||||||||| | | || ||| | |||||||| || | ||| |
Sbjct 18354 CGTGATTCTTGCGGAGATCGAGGAACTCAAAAACATCCGCGTGCCACGGCTCGAGGTAGA 18295
Query 72152 TGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 72211
| || | | | || || || ||||| || ||||| || | ||| | ||| ||||| ||
Sbjct 18294 TAGCAAAAGCACCAGGACGCTTGTTGCCACCCTGGTCAACGTAACGAGCAGTGTTGTTGA 18235
Query 72212 AAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTC 72271
| || | || ||| |||| ||||| || || | ||| || || |||| || || |
Sbjct 18234 ACACACGCAGCATAGGAACGATACCGTTCGAGGTACCGTTAGTGCCGGCAATGTAAGAAC 18175
Query 72272 CACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 72329
|| |||||||||| ||| || || || || || || ||||| || ||||| |
Sbjct 18174 CAGTGGCACGAATGCGGTGCACGTT--CAGGCCAATACCACCCGCCATCTTGGAGATCAT 18117
Query 72330 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 72389
||||| ||| | || |||||||| ||||| || || |||||| |||| | | ||
Sbjct 18116 AGCGCAAGTTTTCAGAGTGTCATAGATACCCTCAATGCTGTCATCCTTCATATCCACGAG 18057
Query 72390 AAAACAGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAG 72445
|| || ||||| ||| || || ||| || || || || | || || || |
Sbjct 18056 GAAGCACGAAGACAGTTG----CGCCTGGGGAGTACCGGCGTTGAAAAGAGTTGGGGATG 18001
Query 72446 CGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-C 72504
| || || || | || |||| || ||||| ||||| | | ||| | |||
Sbjct 18000 CATGAGTGAAGAACTTGCTCGACATGAGGTTGTAGGTCTCCAGGACACGTTCAACATCAT 17941
Query 72505 CATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTG 72564
|| | ||||| || || |||||||| | ||| || ||||| | || |||||||||
Sbjct 17940 CACCCCAG-ATTCCAACAGCAACACGCATGATCATGTGTTGAGGACGCTCGACGATCTTG 17882
Query 72565 TTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TG 72622
| | |||| | ||| || || | || || |||||||| || | ||| ||
Sbjct 17881 CCGTCAAGCTTCAGGAGGTATGAACGCTCAAGCGTCTTGAAACCAAAGTATTGGTAGTTG 17822
Query 72623 AAAAGTCTCGTTCGTAAATAATAACCGA 72650
||| || || ||||| | ||| ||||
Sbjct 17821 AAA--TCACGATCGTACACGATAGCCGA 17796
>seq85
Length=66049
Score = 111 bits (122), Expect = 2e-19
Identities = 365/565 (65%), Gaps = 8/565 (1%)
Strand=Plus/Minus
Query 42079 GTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 42138
||| || |||||||| | || | |||||||| || || || || ||||| || ||
Sbjct 3199 GTGAAGGCCCTCATCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGACC 3140
Query 42139 ACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGC 42198
|||||| ||||| || || || ||||| | || || |||||||| || || || ||
Sbjct 3139 ACGCTTGCGCAGCCAGAAGATGGAGGCAAAAGCACCCGAGAAGAAGATACCCTCGACAGC 3080
Query 42199 CGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACTGTCATGTATCCACTTTTGAGC 42255
|||||||||| || | || || | | | |||| |||||||| | ||
Sbjct 3079 GGCAAAGGCAACGAGACGCTGGGCAAAGGTAGACTCCTTGTCGGCGATCCACTTCAGGGC 3020
Query 42256 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 42315
||| || ||||| | || || || || || ||||| || || || |||
Sbjct 3019 CCAGTCAGCCTTGCGGCGAATGCAGGGAATAGTATCAATGGCGTTGAACAGGTAGGAACG 2960
Query 42316 ttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTT 42375
| || || | || ||||| || | || || | || || ||||||||
Sbjct 2959 CTGGGCGGGCTCCTTGATGTAGGTATCAATGAGCAGCGAGTAGGTCTCGGAGTGAATGTT 2900
Query 42376 TTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACA 42435
||| || ||||| || || || || || | |||||||| || ||| || || | |
Sbjct 2899 TTCCATCATGATCTGGAAACCATAAAAGCAGCGGGCCTCGGGAATCTGGACCTCGGCGGA 2840
Query 42436 AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 42495
|| || ||| | || || ||||| || || |||||| ||| ||||| || |||| |
Sbjct 2839 GAAACGCTCAACCAAGTTCTCGTTGACGATACCGTCAGAGGCGGCAAAGAAAGCCAGGAT 2780
Query 42496 ATGTTTTATAAAATATTTTTCGTCCGGTGTTAAT----TTATTCCAATCATTGATATCTT 42551
|| ||||| | | |||| | |||| || || ||||| || | || ||| |
Sbjct 2779 GTGGGAGATAAAGAACTGCTCGT-CTTTGTTCATGCGGTTGTTCCAGTCGTGGAGATCCT 2721
Query 42552 TAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCC 42611
| || | ||| | || || | ||||| || || || || ||||| || ||||| | ||
Sbjct 2720 TGGACAGATCAATCTCCTCGGCGGTCCAGAAAGAAGCCTCGGCCTTCTTGTACATTTGCC 2661
Query 42612 AGATATCATGATATTGAATTGGGAA 42636
|||| || || || | || |||||
Sbjct 2660 AGATCTCGTGGTACTTGATGGGGAA 2636
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671128654725320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |