Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq54 161 1e-34 seq85 111 2e-19 >seq54 Length=76171 Score = 161 bits (178), Expect = 1e-34 Identities = 454/688 (66%), Gaps = 22/688 (3%) Strand=Plus/Minus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCGTTTCA 72031 ||||| || ||||| || ||||| | | |||||| | | || ||| || || |||| Sbjct 18472 CCAGGGCACTCATTGGGGCACATAAGAGTCCACTCGGCGT--TCTTTTCAACACGCTTCA 18415 Query 72032 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTC 72091 | || |||||||| ||||| ||||| | || ||||| | || | || || || | Sbjct 18414 TGAAAAGATCAGGGATCCACAGAGCCAGGAAAAGATCACGGGCACGGACTTCTTCTTTGC 18355 Query 72092 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 72151 | |||||| |||||||||||| | | || ||| | |||||||| || | ||| | Sbjct 18354 CGTGATTCTTGCGGAGATCGAGGAACTCAAAAACATCCGCGTGCCACGGCTCGAGGTAGA 18295 Query 72152 TGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 72211 | || | | | || || || ||||| || ||||| || | ||| | ||| ||||| || Sbjct 18294 TAGCAAAAGCACCAGGACGCTTGTTGCCACCCTGGTCAACGTAACGAGCAGTGTTGTTGA 18235 Query 72212 AAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTC 72271 | || | || ||| |||| ||||| || || | ||| || || |||| || || | Sbjct 18234 ACACACGCAGCATAGGAACGATACCGTTCGAGGTACCGTTAGTGCCGGCAATGTAAGAAC 18175 Query 72272 CACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 72329 || |||||||||| ||| || || || || || || ||||| || ||||| | Sbjct 18174 CAGTGGCACGAATGCGGTGCACGTT--CAGGCCAATACCACCCGCCATCTTGGAGATCAT 18117 Query 72330 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 72389 ||||| ||| | || |||||||| ||||| || || |||||| |||| | | || Sbjct 18116 AGCGCAAGTTTTCAGAGTGTCATAGATACCCTCAATGCTGTCATCCTTCATATCCACGAG 18057 Query 72390 AAAACAGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAG 72445 || || ||||| ||| || || ||| || || || || | || || || | Sbjct 18056 GAAGCACGAAGACAGTTG----CGCCTGGGGAGTACCGGCGTTGAAAAGAGTTGGGGATG 18001 Query 72446 CGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-C 72504 | || || || | || |||| || ||||| ||||| | | ||| | ||| Sbjct 18000 CATGAGTGAAGAACTTGCTCGACATGAGGTTGTAGGTCTCCAGGACACGTTCAACATCAT 17941 Query 72505 CATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTG 72564 || | ||||| || || |||||||| | ||| || ||||| | || ||||||||| Sbjct 17940 CACCCCAG-ATTCCAACAGCAACACGCATGATCATGTGTTGAGGACGCTCGACGATCTTG 17882 Query 72565 TTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TG 72622 | | |||| | ||| || || | || || |||||||| || | ||| || Sbjct 17881 CCGTCAAGCTTCAGGAGGTATGAACGCTCAAGCGTCTTGAAACCAAAGTATTGGTAGTTG 17822 Query 72623 AAAAGTCTCGTTCGTAAATAATAACCGA 72650 ||| || || ||||| | ||| |||| Sbjct 17821 AAA--TCACGATCGTACACGATAGCCGA 17796 >seq85 Length=66049 Score = 111 bits (122), Expect = 2e-19 Identities = 365/565 (65%), Gaps = 8/565 (1%) Strand=Plus/Minus Query 42079 GTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 42138 ||| || |||||||| | || | |||||||| || || || || ||||| || || Sbjct 3199 GTGAAGGCCCTCATCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGACC 3140 Query 42139 ACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGC 42198 |||||| ||||| || || || ||||| | || || |||||||| || || || || Sbjct 3139 ACGCTTGCGCAGCCAGAAGATGGAGGCAAAAGCACCCGAGAAGAAGATACCCTCGACAGC 3080 Query 42199 CGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACTGTCATGTATCCACTTTTGAGC 42255 |||||||||| || | || || | | | |||| |||||||| | || Sbjct 3079 GGCAAAGGCAACGAGACGCTGGGCAAAGGTAGACTCCTTGTCGGCGATCCACTTCAGGGC 3020 Query 42256 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 42315 ||| || ||||| | || || || || || ||||| || || || ||| Sbjct 3019 CCAGTCAGCCTTGCGGCGAATGCAGGGAATAGTATCAATGGCGTTGAACAGGTAGGAACG 2960 Query 42316 ttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTT 42375 | || || | || ||||| || | || || | || || |||||||| Sbjct 2959 CTGGGCGGGCTCCTTGATGTAGGTATCAATGAGCAGCGAGTAGGTCTCGGAGTGAATGTT 2900 Query 42376 TTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACA 42435 ||| || ||||| || || || || || | |||||||| || ||| || || | | Sbjct 2899 TTCCATCATGATCTGGAAACCATAAAAGCAGCGGGCCTCGGGAATCTGGACCTCGGCGGA 2840 Query 42436 AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 42495 || || ||| | || || ||||| || || |||||| ||| ||||| || |||| | Sbjct 2839 GAAACGCTCAACCAAGTTCTCGTTGACGATACCGTCAGAGGCGGCAAAGAAAGCCAGGAT 2780 Query 42496 ATGTTTTATAAAATATTTTTCGTCCGGTGTTAAT----TTATTCCAATCATTGATATCTT 42551 || ||||| | | |||| | |||| || || ||||| || | || ||| | Sbjct 2779 GTGGGAGATAAAGAACTGCTCGT-CTTTGTTCATGCGGTTGTTCCAGTCGTGGAGATCCT 2721 Query 42552 TAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCC 42611 | || | ||| | || || | ||||| || || || || ||||| || ||||| | || Sbjct 2720 TGGACAGATCAATCTCCTCGGCGGTCCAGAAAGAAGCCTCGGCCTTCTTGTACATTTGCC 2661 Query 42612 AGATATCATGATATTGAATTGGGAA 42636 |||| || || || | || ||||| Sbjct 2660 AGATCTCGTGGTACTTGATGGGGAA 2636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671128654725320